Sequence and Structure Analysis Servers
- Algal Functional Genomics
- Diffraction Anisotropy Server
Perform Ellipsoidal Truncation and Anisotropic Scaling. - Diffusion Accessibility Server
Diffusion accessibility gives a measure of surface accessibility that is longer range in nature than ordinary solvent accessibility. - FAES – Factors of Electronic Scattering A computational tool which (a) enables Gaussian parameterization of elastic electron scattering factors into six analytical approximations and (b) derives fractionally charged scattering factors by computing weighted sums of adjacent integral neighbors.
- SAVEs v4: Structure Analysis and Verification server
- Self Rotation Function Server
Generate Self Rotation Function from ScalePack or MTZ File. - Surface Entropy Reduction Prediction Server (SERp)
Tool to aid in identification of sites that are most suitable for mutation designed to enhance crystallizability by a Surface Entropy Reduction approach. - Transmembrane Kink Predictor (TMKink)
Perform transmembrane kink prediction from sequence - Twin detection with improved robustness – Version 3 The Padilla-Yeates algorithm
- 3D Viewer and QR code maker – share QR codes to launch the 3D viewer of your protein structure
- X-dVal
x-dVal is an X-ray Data Validation server utilizing software from the PHENIX project, CCP4, and in house software for help in determining problems with X-ray diffraction data. - ZipperDB
A database containing predictions of fibril-forming segments within proteins identified by the 3D Profile Method.
Databases
- DIP: Database of Interacting Proteins
- MCPDB – Bacterial Microcompartment Database
- ProLinks
- Sortase Database
- Xtrip – track and store crystals and data collections at synchrotrons
- ZipperDB: Predictions of fibril-forming segments within proteins identified by the 3D Profile Method
