New Services Gateway
- Diffraction Anisotropy Server
Perform Ellipsoidal Truncation and Anisotropic Scaling. - Diffusion Accessibility Server
Diffusion accessibility gives a measure of surface accessibility that is longer range in nature than ordinary solvent accessibility. - SAVEs v4: Structure Analysis and Verification server
- Self Rotation Function Server
Generate Self Rotation Function from ScalePack or MTZ File. - Surface Entropy Reduction Prediction Server (SERp)
Tool to aid in identification of sites that are most suitable for mutation designed to enhance crystallizability by a Surface Entropy Reduction approach. - Transmembrane Kink Predictor (TMKink)
Perform transmembrane kink prediction from sequence - Twin detection with improved robustness – Version 3 The Padilla-Yeates algorithm
- X-dVal
x-dVal is an X-ray Data Validation server utilizing software from the PHENIX project, CCP4, and in house software for help in determining problems with X-ray diffraction data. - ZipperDB
A database containing predictions of fibril-forming segments within proteins identified by the 3D Profile Method.
Crystallization Wizard
- Click here for crystalization tools.
Databases
- ZipperDB: Predictions of fibril-forming segments within proteins identified by the 3D Profile Method
Data → Structure
- Surface Entropy Reduction (SER) server: Identification of mutations designed to enhance protein crystallizability
- SAVEs v4: Structure Analysis and Verification server
Sequence → Structure
- Algal Functional Genomics
- Bayesian Inference of Residue Contacts
- DPANN: Sequence to Structure Alignment
- FAD or NADP binding Rossmann fold detector
- Fold Recognition
- Internal Repeat Finder
- MOMENT Transmembrane Helix Prediction
- Motif-Based Fold Assignment
- Transmembrane Kink Predictor (TMKink)
- Profile Search Software: Bowie et al. 1991
- Surface Entropy Reduction Crystallization Server
Sequence → Function
- Domain Fusion and Functionally Related Proteins
- Functional inferrence for yeast proteins on a genomic scale from multiple networks
- Genome-wide Prediction of Yeast Protein Function
- Mitochondrial Protein Prediction
- Partial Order Alignment
- Rare Codon Calculator
Structure → Function
- 3D Cluster Analysis of Functional Protein Sites
- HotPatch: Find functionally important patches on structures
- ProKnow: A server to suggest functions and annotations for a protein of known structure