Services

New Services Gateway

• Diffraction Anisotropy Server
  Perform Ellipsoidal Truncation and Anisotropic Scaling.
• SAVEs v4: Structure Analysis and Verification server
• Self Rotation Function Server
  Generate Self Rotation Function from ScalePack or MTZ File.
• Surface Entropy Reduction Prediction Server (SERp)
  Tool to aid in identification of sites that are most suitable for mutation designed to enhance crystallizability by a Surface Entropy Reduction approach.
• xtlTriage
  phenix.xtriage is a program that performs a number of basic 'sanity' checks on an Xray data set. It provides a quick way of determining certain idiosynchrasies of the data.
• ZipperDB
  A database containing predictions of fibril-forming segments within proteins identified by the 3D Profile Method.

Crystallization Wizard

• Click here for crystalization tools.

Databases

• DIP: Database of Interacting Proteins
• ProLinks
• Protein Triples
• Structural Genomics of Mycobacterium tuberculosis
• MTBreg: the regulated Mtb proteins
• DAPS: Database of Aligned Protein Structures
• HIV and Alternative Splicing Databases
• ZipperDB: Predictions of fibril-forming segments within proteins identified by the 3D Profile Method

Data → Structure

• Merohedral Crystal Twinning Test
• Twin detection with improved robustness. The twin statistic calculated here is based on local intensity differences making it less sensitive to phenomena that tend to confound traditional intensity statistics, such as anisotropic diffraction and pseudo-centering.
• Surface Entropy Reduction (SER) server: Identification of mutations designed to enhance protein crystallizability
• SAVEs v2: Structure Analysis and Verification server
• Verify3D Structure Evaluation
• ERRAT Protein Structure Evaluation

Sequence → Structure

• Algal Functional Genomics
• Bayesian Inference of Residue Contacts
• FAD or NADP binding Rossmann fold detector
• Fold Recognition
• Internal Repeat Finder
• MOMENT Transmembrane Helix Prediction
• Motif-Based Fold Assignment
• DPANN: Sequence to Structure Alignment
• Profile Search Software: Bowie et al. 1991
• Surface Entropy Reduction Crystallization Server

Sequence → Function

• Domain Fusion and Functionally Related Proteins
• Functional inferrence for yeast proteins on a genomic scale from multiple networks
• Genome-wide Prediction of Yeast Protein Function
• Mitochondrial Protein Prediction
• Partial Order Alignment
• Rare Codon Calculator

Structure → Function

• 3D Cluster Analysis of Functional Protein Sites
• HotPatch: Find functionally important patches on structures
• ProKnow: A server to suggest functions and annotations for a protein of known structure