Yi Xing's Alternative Splicing and Computational Genomics Blog http://www.doe-mbi.ucla.edu/~yxing/AS/ en-us 2006-08-18T18:24:00-08:00 Last Post Here http://www.doe-mbi.ucla.edu/~yxing/archives2/000175.html This is my last post on this site. I am moving my blog to a new site. Please follow the link to RNA Bioinformatics.... yxing 2006-08-18T18:24:00-08:00 R/Bioconductor http://www.doe-mbi.ucla.edu/~yxing/archives2/000173.html library(affy) #Fit Li and Wong Model to a Probe Set Description: Fits the model described in Li and Wong (2001) to a probe set with I chips and J probes. fit.li.wong(data.matrix,remove.outliers=TRUE, normal.array.quantile=0.5, normal.resid.quantile=0.9, large.threshold=3, large.variation=0.8, outlier.fraction=0.14, delta=1e-06, maxit=50, outer.maxit=50,verbose=FALSE, ...)... yxing 2006-07-24T02:07:40-08:00 Rafael A. Irizarry's Stanford course on Microarray Data Analysis http://www.doe-mbi.ucla.edu/~yxing/archives2/000172.html Rafael Irizarry is teaching a class at Stanford this summer on microarray data analysis. I am auditing it.... yxing 2006-07-10T17:10:52-08:00 RECOMB Systems Biology 2006 http://www.doe-mbi.ucla.edu/~yxing/archives2/000171.html Conference Website... yxing 2006-07-06T01:14:37-08:00 Detecting exonic splicing elements using comparative genomics http://www.doe-mbi.ucla.edu/~yxing/archives2/000170.html From Gil Ast group. Click here... yxing 2006-06-24T01:01:34-08:00 Mosquito version of DSCAM also has many isoforms http://www.doe-mbi.ucla.edu/~yxing/archives2/000169.html AgDscam, more than 31000 potential isoforms. Interesting.... yxing 2006-06-19T18:32:27-08:00 Our new review on alternative splicing http://www.doe-mbi.ucla.edu/~yxing/archives2/000168.html Alternative splicing and RNA selection pressure: evolutionary consequences for eukaryotic genomes. 2006, Xing, Y., Lee, C. Nature Reviews Genetics, in press. The review is online. Click here Update: the entire July issue of NRG is online. So please get our... yxing 2006-06-07T18:16:24-08:00 more on motif findings http://www.doe-mbi.ucla.edu/~yxing/archives2/000167.html Qing Zhou's PhD dissertation. Very good materials for learning more about motif findings.... yxing 2006-06-07T18:03:47-08:00 See our recent NAR paper on probabilistic isoform inference http://www.doe-mbi.ucla.edu/~yxing/archives2/000166.html Click here... yxing 2006-06-06T14:58:35-08:00 Copy editing symbols http://www.doe-mbi.ucla.edu/~yxing/archives2/000165.html Click here... yxing 2006-06-01T22:34:04-08:00 SAM http://www.doe-mbi.ucla.edu/~yxing/archives2/000164.html SAM Web Site... yxing 2006-05-30T23:33:48-08:00 Jun Liu's Publications http://www.doe-mbi.ucla.edu/~yxing/archives2/000163.html Click here... yxing 2006-05-30T09:06:59-08:00 Online Supplement to the Probabilistic Isoform Method Paper http://www.doe-mbi.ucla.edu/~yxing/archives2/000162.html Click here It turns out that UC is not a NAR Open Access institutional member this year. So we'll have to pay the 1900$ Open Access fee. Ouch...... yxing 2006-05-16T02:23:59-08:00 dChip User Manual http://www.doe-mbi.ucla.edu/~yxing/archives2/000161.html Click Here... yxing 2006-05-11T00:39:11-08:00 RECOMB 2006 Comparative Genomics http://www.doe-mbi.ucla.edu/~yxing/archives2/000160.html Sept 2006, Montreal, Canada. Click here... yxing 2006-05-11T00:21:20-08:00