SFR Database
(formerly called ACT)

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Full SFR Database + OGM

Below is the full SFR database as flat-text files (ACT format.) This release contains all the information in SFR, in a format which can be easy to scan through (using grep or Perl or some other text pattern-matching software), if you are asking simple questions; but the format can be quite complex to scan if you are asking hard questions. To fully utilize all the features of SFR, you will need the help of its online documentation.

The release includes:

Shift-click or right-click on the links below to download.

SFR Package 3.0 in flat-text (ACT) format
tar & ZIP format tar & gzip format

Extracts of SFR

These EXTRACTS from SFR represent the information that most users will need in a much simpler format than the full SFR database. What most users need is a list of the functional residues or atoms in each protein, and/or a list of each protein's substrates or cofactors. If that's all you want, the extracts provide it in a form that is easier to scan and parse.

In the extracts, all of the spatial symmetries (crystallographic & homo-oligomeric) that are built into SFR are pre-expanded, so you need not worry about doing the spatial transformations to create the biologically relevant oligomeric forms. Moreover, each extract corresponds to a subset of proteins with a particular protein function (e.g. proteases, kinases, metal-binding, DNA/RNA-interacting, etc.)

Advantages:

Disadvantages:

SFR Extracts: Lists of Functional Site Atoms

This download contains a set of files which list all atoms in functional sites of a particular type as designated by SFR 3.0. Each file corresponds to a particular protein function. The format is easier to parse than the full database.

Shift-click or right-click on the links below to download.

SFR Extract: Lists of Functional Site Atoms
tar & ZIP format tar & gzip format

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