Citation report Abstract report MEDLINE report ASN.1 report Related articles protein links nucleotide links structure links genome links for the articles selected Query: protein interaction yeast Knudsen CR, et al. Application of the yeast two-hybrid system in molecular gerontology. Biogerontology. 2002;3(4):243-56. [PubMed - in process] PMID: 12232506; UI: 22217233. Bischler N, et al. Localization of the yeast RNA polymerase I-specific subunits. EMBO J. 2002 Aug 1;21(15):4136-44. [PubMed - indexed for MEDLINE] PMID: 12145213; UI: 22140049. Xu YC, et al. Involvement of TRAF4 in oxidative activation of c-Jun N-terminal kinase. J Biol Chem. 2002 Aug 2;277(31):28051-7. [PubMed - indexed for MEDLINE] PMID: 12023963; UI: 22140343. Query: protein complex yeast Turkel S. The GCR2 gene is required for the transcriptional activation of retrotransposon Ty2-917 in Saccharomyces cerevisiae. Biol Pharm Bull. 2002 Sep;25(9):1212-3. [PubMed - in process] PMID: 12230120; UI: 22216312. Query: coli protein interaction NOT dna NOT rna NOT eucaryotic NOT yeast NOT saccharomyces NOT pombe NOT cerevisiae NOT mouse NOT mice NOT human NOT rat NOT virus NOT viral NOT phage NOT bacteriophage NOT melanogaster Sourjik V, et al. Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer. Proc Natl Acad Sci U S A. 2002 Sep 13;. [PubMed - as supplied by publisher] PMID: 12232047. Query: colicin Wu Y, et al. Interaction of Colicin E(1) with Lipid Membranes. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai). 1996;28(4):346-351. [PubMed - as supplied by publisher] PMID: 12232625. Jordi BJ, et al. Sensitivity of Shiga toxin-producing Escherichia coli (STEC) strains for colicins under different experimental conditions. FEMS Microbiol Lett. 2001 Nov 13;204(2):329-34. [PubMed - indexed for MEDLINE] PMID: 11731144; UI: 21587920. Gritsenko VA, et al. [Ecovariant differences of Escherichia coli strains with respect to colicinogenicity and colicin resistance.] Zh Mikrobiol Epidemiol Immunobiol. 2001 May-Jun;(3):87-9. Russian. [PubMed - indexed for MEDLINE] PMID: 11550571; UI: 21435354. Ferguson N, et al. Using chimeric immunity proteins to explore the energy landscape for alpha-helical protein folding. J Mol Biol. 2001 Mar 16;307(1):393-405. [PubMed - indexed for MEDLINE] PMID: 11243827; UI: 21140185. Sui SF. Membrane-induced conformational change of proteins. Adv Colloid Interface Sci. 2000 Mar 31;85(2-3):257-67. Review. [PubMed - indexed for MEDLINE] PMID: 10768483; UI: 20228970. Paulsson J, et al. Molecular clocks reduce plasmid loss rates: the R1 case. J Mol Biol. 2000 Mar 17;297(1):179-92. [PubMed - indexed for MEDLINE] PMID: 10704315; UI: 20171593. Li C, et al. Crystal structure of colicin E3 immunity protein: an inhibitor of a ribosome-inactivating RNase. Structure Fold Des. 1999 Nov 15;7(11):1365-72. [PubMed - indexed for MEDLINE] PMID: 10574790; UI: 20045186. Braun M, et al. The beta-barrel domain of FhuADelta5-160 is sufficient for TonB-dependent FhuA activities of Escherichia coli. Mol Microbiol. 1999 Sep;33(5):1037-49. [PubMed - indexed for MEDLINE] PMID: 10476037; UI: 99406910. Salah el Din AL, et al. Synthesis and activity of p-azidobenzoyloxyferricrocin, a photoactivatable analog of ferrichrome. Biometals. 1999 Jun;12(2):151-60. [PubMed - indexed for MEDLINE] PMID: 10406084; UI: 99334585. Whittaker SB, et al. NMR detection of slow conformational dynamics in an endonuclease toxin. J Biomol NMR. 1998 Jul;12(1):145-59. [PubMed - indexed for MEDLINE] PMID: 9729794; UI: 98399493. Li W, et al. Dual recognition and the role of specificity-determining residues in colicin E9 DNase-immunity protein interactions. Biochemistry. 1998 Aug 25;37(34):11771-9. [PubMed - indexed for MEDLINE] PMID: 9718299; UI: 98384142. Hsieh SY, et al. A novel role of ImmE7 in the autoregulatory expression of the ColE7 operon and identification of possible RNase active sites in the crystal structure of dimeric ImmE7. EMBO J. 1997 Mar 17;16(6):1444-54. [PubMed - indexed for MEDLINE] PMID: 9135159; UI: 97280832. Graham MR, et al. Cloning and characterization of the exbB-exbD-tonB locus of Pasteurella haemolytica A1. Gene. 1997 Feb 28;186(2):201-5. [PubMed - indexed for MEDLINE] PMID: 9074497; UI: 97228419. Diarra MS, et al. Species selectivity of new siderophore-drug conjugates that use specific iron uptake for entry into bacteria. Antimicrob Agents Chemother. 1996 Nov;40(11):2610-7. [PubMed - indexed for MEDLINE] PMID: 8913474; UI: 97070548. Brickman TJ, et al. Colicins B and Ia as novel counterselective agents in interspecies conjugal DNA transfers from colicin-sensitive Escherichia coli donors to other gram-negative recipient species. Gene. 1996 Oct 31;178(1-2):39-42. [PubMed - indexed for MEDLINE] PMID: 8921889; UI: 97080544. Rajakumar K, et al. Evolutionary perspective on a composite Shigella flexneri 2a virulence plasmid-borne locus comprising three distinct genetic elements. FEMS Microbiol Lett. 1996 Oct 15;144(1):13-20. [PubMed - indexed for MEDLINE] PMID: 8870246; UI: 97023925. Evans LJ, et al. Different sensitivities to acid denaturation within a family of proteins: implications for acid unfolding and membrane translocation. Biochemistry. 1996 Oct 8;35(40):13180-5. [PubMed - indexed for MEDLINE] PMID: 8855956; UI: 97008839. Binet R, et al. Cloning of the Serratia marcescens hasF gene encoding the Has ABC exporter outer membrane component: a TolC analogue. Mol Microbiol. 1996 Oct;22(2):265-73. [PubMed - indexed for MEDLINE] PMID: 8930911; UI: 97084568. Stolt P, et al. Functional definition of regions necessary for replication and incompatibility in the Mycobacterium fortuitum plasmid pAL5000. Microbiology. 1996 Oct;142 ( Pt 10):2795-802. [PubMed - indexed for MEDLINE] PMID: 8885395; UI: 97039849. Viguera E, et al. The ColE1 unidirectional origin acts as a polar replication fork pausing site. J Biol Chem. 1996 Sep 13;271(37):22414-21. [PubMed - indexed for MEDLINE] PMID: 8798404; UI: 96394298. Murinda SE, et al. Evaluation of colicins for inhibitory activity against diarrheagenic Escherichia coli strains, including serotype O157:H7. Appl Environ Microbiol. 1996 Sep;62(9):3196-202. [PubMed - indexed for MEDLINE] PMID: 8795210; UI: 96387740. El Kouhen R, et al. Dynamic aspects of colicin N translocation through the Escherichia coli outer membrane. J Bacteriol. 1996 Sep;178(17):5316-9. [PubMed - indexed for MEDLINE] PMID: 8752354; UI: 96359390. Service RF. Crystallographers pinpoint what goes where. Science. 1996 Aug 30;273(5279):1174-5. No abstract available. [PubMed - indexed for MEDLINE] PMID: 8787122; UI: 96374855. Garinot-Schneider C, et al. Identification of putative active-site residues in the DNase domain of colicin E9 by random mutagenesis. J Mol Biol. 1996 Aug 2;260(5):731-42. [PubMed - indexed for MEDLINE] PMID: 8709151; UI: 96326704. Tan Y, et al. Rapid invasion by colicinogenic Escherichia coli with novel immunity functions. Microbiology. 1996 Aug;142 ( Pt 8):2175-80. [PubMed - indexed for MEDLINE] PMID: 8760932; UI: 96349125. Ngeleka M, et al. Escherichia coli cellulitis in broiler chickens: clonal relationships among strains and analysis of virulence-associated factors of isolates from diseased birds. Infect Immun. 1996 Aug;64(8):3118-26. [PubMed - indexed for MEDLINE] PMID: 8757842; UI: 96333348. Iwaki T, et al. Preferential replication-dependent mutagenesis in the lagging DNA strand in Escherichia coli. Mol Gen Genet. 1996 Jul 26;251(6):657-64. [PubMed - indexed for MEDLINE] PMID: 8757396; UI: 96335140. Osborne MJ, et al. Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9. Biochemistry. 1996 Jul 23;35(29):9505-12. [PubMed - indexed for MEDLINE] PMID: 8755730; UI: 96302249. Wooley RE, et al. Analysis of plasmids cloned from a virulent avian Escherichia coli and transformed into Escherichia coli DH5 alpha. Avian Dis. 1996 Jul-Sep;40(3):533-9. [PubMed - indexed for MEDLINE] PMID: 8883780; UI: 97038186. James R, et al. The biology of E colicins: paradigms and paradoxes. Microbiology. 1996 Jul;142 ( Pt 7):1569-80. Review. No abstract available. [PubMed - indexed for MEDLINE] PMID: 8757721; UI: 96303497. Duche D, et al. Membrane topology of the colicin A pore-forming domain analyzed by disulfide bond engineering. J Biol Chem. 1996 Jun 28;271(26):15401-6. [PubMed - indexed for MEDLINE] PMID: 8663026; UI: 96279052. Chak KF, et al. The crystal structure of the immunity protein of colicin E7 suggests a possible colicin-interacting surface. Proc Natl Acad Sci U S A. 1996 Jun 25;93(13):6437-42. [PubMed - indexed for MEDLINE] PMID: 8692833; UI: 96270557. Lu FM, et al. Two overlapping SOS-boxes in ColE operons are responsible for the viability of cells harboring the Col plasmid. Mol Gen Genet. 1996 Jun 24;251(4):407-11. [PubMed - indexed for MEDLINE] PMID: 8709943; UI: 96285563. Gross P, et al. Colicin M is inactivated during import by its immunity protein. Mol Gen Genet. 1996 Jun 12;251(3):388-96. [PubMed - indexed for MEDLINE] PMID: 8676883; UI: 96262193. Zakharov SD, et al. Membrane binding of the colicin E1 channel: activity requires an electrostatic interaction of intermediate magnitude. Biophys J. 1996 Jun;70(6):2774-83. [PubMed - indexed for MEDLINE] PMID: 8744315; UI: 96363755. Qu JN, et al. The tolZ gene of Escherichia coli is identified as the ftsH gene. J Bacteriol. 1996 Jun;178(12):3457-61. [PubMed - indexed for MEDLINE] PMID: 8655541; UI: 96256597. Espesset D, et al. The channel domain of colicin A is inhibited by its immunity protein through direct interaction in the Escherichia coli inner membrane. EMBO J. 1996 May 15;15(10):2356-64. [PubMed - indexed for MEDLINE] PMID: 8665842; UI: 96221295. Dayem MA, et al. The putative immunity protein of the gram-positive bacteria Leuconostoc mesenteroides is preferentially located in the cytoplasm compartment. FEMS Microbiol Lett. 1996 May 1;138(2-3):251-9. [PubMed - indexed for MEDLINE] PMID: 9026455; UI: 96242327. Skvirsky RC, et al. Is the CvaA protein, encoded within the colicin V export gene cvaA, required for colicin V transport? FEMS Microbiol Lett. 1996 May 1;138(2-3):201-6. [PubMed - indexed for MEDLINE] PMID: 9026446; UI: 96242318. de la Cruz X, et al. The structural homology between uteroglobin and the pore-forming domain of colicin A suggests a possible mechanism of action for uteroglobin. Protein Sci. 1996 May;5(5):857-61. [PubMed - indexed for MEDLINE] PMID: 8732757; UI: 96303808. Aymerich T, et al. Biochemical and genetic characterization of enterocin A from Enterococcus faecium, a new antilisterial bacteriocin in the pediocin family of bacteriocins. Appl Environ Microbiol. 1996 May;62(5):1676-82. [PubMed - indexed for MEDLINE] PMID: 8633865; UI: 96209231. Braun V, et al. Energy-coupled transport across the outer membrane of Escherichia coli: ExbB binds ExbD and TonB in vitro, and leucine 132 in the periplasmic region and aspartate 25 in the transmembrane region are important for ExbD activity. J Bacteriol. 1996 May;178(10):2836-45. [PubMed - indexed for MEDLINE] PMID: 8631671; UI: 96213023. Suhan ML, et al. Transformation of Coxiella burnetii to ampicillin resistance. J Bacteriol. 1996 May;178(9):2701-8. [PubMed - indexed for MEDLINE] PMID: 8626341; UI: 96196180. Pilsl H, et al. Periplasmic location of the pesticin immunity protein suggests inactivation of pesticin in the periplasm. J Bacteriol. 1996 Apr;178(8):2431-5. [PubMed - indexed for MEDLINE] PMID: 8636051; UI: 96218718. Eraso JM, et al. Increased production of colicin E1 in stationary phase. J Bacteriol. 1996 Apr;178(7):1928-35. 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Characterization of electrostatic and nonelectrostatic components of protein--membrane binding interactions. Biochemistry. 1996 Feb 27;35(8):2717-25. [PubMed - indexed for MEDLINE] PMID: 8611578; UI: 96180699. Evans LJ, et al. Direct measurement of the association of a protein with a family of membrane receptors. J Mol Biol. 1996 Feb 2;255(4):559-63. [PubMed - indexed for MEDLINE] PMID: 8568897; UI: 96163554. Ferrer S, et al. Genetic evidence for an activator required for induction of colicin-like bacteriocin 28b production in Serratia marcescens by DNA-damaging agents. J Bacteriol. 1996 Feb;178(4):951-60. [PubMed - indexed for MEDLINE] PMID: 8576068; UI: 96165247. Holm L, et al. Alignment of three-dimensional protein structures: network server for database searching. Methods Enzymol. 1996;266:653-62. No abstract available. [PubMed - indexed for MEDLINE] PMID: 8743712; UI: 96338768. Enfedaque J, et al. Bacteriocin 28b from Serratia marcescens N28b: identification of Escherichia coli surface components involved in bacteriocin binding and translocation. Can J Microbiol. 1996 Jan;42(1):19-26. [PubMed - indexed for MEDLINE] PMID: 8595593; UI: 96158119. Zawadzki P, et al. Homology among nearly all plasmids infecting three Bacillus species. J Bacteriol. 1996 Jan;178(1):191-8. [PubMed - indexed for MEDLINE] PMID: 8550416; UI: 96125246. Kageyama M, et al. Construction and characterization of pyocin-colicin chimeric proteins. J Bacteriol. 1996 Jan;178(1):103-10. [PubMed - indexed for MEDLINE] PMID: 8550402; UI: 96125234. Ku WY, et al. Crystallization and preliminary X-ray crystallographic analysis of ImmE7 protein of colicin E7. Proteins. 1995 Dec;23(4):588-90. [PubMed - indexed for MEDLINE] PMID: 8749855; UI: 96351880. Pilsl H, et al. Strong function-related homology between the pore-forming colicins K and 5. J Bacteriol. 1995 Dec;177(23):6973-7. 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Genotypic and phenotypic characters and nosocomial significance of bacteria endemic in neonatal intensive care units. Acta Microbiol Immunol Hung. 1994;41(2):127-51. [PubMed - indexed for MEDLINE] PMID: 7804718; UI: 95103150. Sugiyama T, et al. Control of ColE2 DNA replication: in vitro binding of the antisense RNA to the Rep mRNA. Nucleic Acids Res. 1993 Dec 25;21(25):5972-7. [PubMed - indexed for MEDLINE] PMID: 7507236; UI: 94119699. Massotte D, et al. Structure of the membrane-bound form of the pore-forming domain of colicin A: a partial proteolysis and mass spectrometry study. Biochemistry. 1993 Dec 21;32(50):13787-94. [PubMed - indexed for MEDLINE] PMID: 8268153; UI: 94092658. Fath MJ, et al. ABC transporters: bacterial exporters. Microbiol Rev. 1993 Dec;57(4):995-1017. Review. [PubMed - indexed for MEDLINE] PMID: 8302219; UI: 94133968. Checked 5374 entries and saved 201 new entrie(s) The UID codes of previously seen papers were saved to uidlist.txt. To see all entries delete uidlist.txt. [MedAgent] R.Landgraf 9/2000