LOCAL

Computational Seminar

The seminar is devoted to informal computational biology discussions.
The speaker of each month will discuss his research progress/problems or could present a highly interesting computational paper instead.

Schedule

Day: The third Wednesday of every month at 2:00pm
Place: MBI 244 (2nd floor conference room)

Date Speaker Presentation Title

Sep 17, 2008

James Stroud

Fluorit: A GUI Driven Program for Analysis of Fluorometric Fibrillogenesis Data

Aug 6, 2008

Qi Wang

Computational Analysis of HIV-1 Evolution and Drug Resistance

Jun 18, 2008

Luki Goldschmidt

 The Unofficial Rosetta Howto

May 21, 2008

Minghsun Liu

A sequence-composition based approach for high-resolution phylotyping and unbiased gene discovery in genomic/metagenomic data.

Apr 16, 2008

Luis Arturo Medrano-Soto

What is the best working definition of orthology?

Mar 19, 2008

Matteo Pellegrini, MCDB UCLA

Whole Genome DNA Methylation in Arabidopsis at Single Base Resolution with Solexa/Illumina Ultra-High-Throughput Sequencing

Feb 20, 2008

Eleazar Eskin, CS & Human Genetics UCLA

Integrated Genomics Approaches to Discovering the Genetic Basis of Complex Traits in Inbred Mouse Strains

Jan 30, 2008

Dr. Sorel T Fitz-Gibbon
Astrobiology UCLA

Metagenomic analysis of the sub-seafloor biosphere

Dec 12, 2007

Arturo Medrano-Soto

Paper presentation:BMC Bioinformatics,Aug 8, 2007. 8:294.
"Quantitative sequence-function relationships in proteins based on gene ontology."

Oct 17, 2007

Richard Llewellyn

Applying Bayesian Functional Linkages to uncharacterized prokaryotes.

Sep 19, 2007

Frank Pettit

Representing Complex Molecular Interactions in Databases

Aug 22, 2007

Lukasz Salwinski

MiTap extension to Firefox: a tool for interactive building of protein interaction networks in Cytoscape.

Jul 18, 2007

Debnath Pal, IISc Bangalore

Dissecting functionally important segments in proteins using Gene Ontology and geometric clustering of peptide fragments

Jun 20, 2007

Lukasz Salwinski

Paper presentation: ENCODE Project Consortium. (2007) Nature, Jun 14;447(7146), 799-816.
"Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project."

May 16, 2007

Einat Sprinzak

Reconstructing Regulatory Relations between Cellular Complexes using Logic Analysis

Mar 28, 2007

Chris Miller

Paper presentation: Science, 2007 Feb 23;315(5815), 1126-30.
"Quantitative phylogenetic assessment of microbial communities in diverse environments."

Jan 31, 2007

Lukasz Salwinski

'The MiSink Plugin. Cytoscape as a graphical front-end to DIP.'

Jan 17, 2007

Huiying Li

Paper presentation: Science, 2006, 314(5797), 268-74.
"The Consensus Coding Sequences of Human Breast and Colorectal Cancers"

Dec 6, 2006

Mike Smoot, UCSD

Mike will talk about Cytoscape internals, starting with an introduction to Cytoscape plugin development

Nov 22, 2006

Lukasz Salwinski

Paper presentation: PLoS Biol., 2006 Sep 19;4(10), e153.
"Stratus Not Altocumulus: A New View of the Yeast Protein Interaction Network"

Oct 18, 2006

James Stroud

Intramolecular domain swapping"

Sep 6, 2006

Jason Nerothin

curator wrap-up and bioinformatics data-access patterns

Aug 16, 2006

Chris Miller

Chris will discuss computational methods to detect correlated mutations from multiple sequence alignments

Jul 27, 2006

Lukasz Salwinski

Lukasz will discuss some research topics which are related to DIP (Database of Interacting Proteins)

 



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Last modified: Saturday, November 07, 2009