Program to align a subset of each of two coordinate sets using the Kabsch algorithm. After that, produce a revised list of matches using the Needleman-Wunsch algorithm. The program was written by G. H. Cohen, NIH, Bethesda, MD.

The reference is JMB (1986), 190, 593-604

ALIGN runs on all the DEC-ALPHAs; the executables are in:

/joule2/programs/bin/align_v2

The FORTRAN source is in:

/joule2/programs/align/align_v2.for