Regulated proteins in Mycobacterium tuberculosis identified by comparative transcriptomics
The published datasets of regulated proteins in Mycobacterium tuberculosis that are identified by comperative transcriptomics are displayed here.

Study Name	Study Title	Reference
r00001	isoniazid (INH) induced - microarray - Schoolnik	Wilson M, DeRis...
r00002	isoniazid (INH) induced - DECAL experiment - Jacobs and Bloom	Alland D, Kramn...
r00003	macrophage induced - SCOTS experiment Clark-Curtiss	Graham JE, Clar...
r00004	macrophage induced - RT-PCR experiment Colizzi	Mariani F, Capp...
r00005	hypoxic response - microarray - Schoolnik	Sherman DR, Vos...
r00006	Inhibition of respiration and growth by NO - microarray - Schoolnik	Voskuil MI, Sch...
r00007	mycobacterial growth in macrophages - microarray - Schoolnik	Schnappinger D,...
r00008	nutrition starvation (4h) upregulated genes - microarray - Duncan	Betts JC, Lukey...
r00009	nutrition starvation (24h) - upregulated genes - microarray - Duncan	Betts JC, Lukey...
r00010	nutrition starvation (96h) upregulated genes - microarray - Duncan	Betts JC, Lukey...
r00011	nutrition starvation (4h) downregulated genes - microarray - Duncan	Betts JC, Lukey...
r00012	nutrition starvation (24h) upregulated genes - microarray - Duncan	Betts JC, Lukey...
r00013	nutrition starvation (96h) upregulated genes - microarray - Duncan	Betts JC, Lukey...
r00014	Genes induced by isoniazid, thiolactomycin - microarray - Duncan	Betts JC, McLar...
r00021	genes induced by tricosan -microarray - Duncan	Betts JC, McLar...
r00015	effect of NO on gene expression -upregulated proteins - microarray - Jacobs and Chan	Ohno H, Zhu G, ...
r00016	effect of NO on gene expression - downregulated proteins - microarray - Jacobs and Chan	Ohno H, Zhu G, ...
r00019	acidic pH upregulated genes - microarray - Shinnick	Fisher MA, Plik...
r00020	acid pH downregulated genes - microarray - Shinnick	Fisher MA, Plik...
r00022	gene expression response in mice - micorarray Johnston	Talaat AM, Lyon...
r00023	upregulated genes in response to the antimicrobial agents isoniazid - microarray - Besra	Waddell SJ, Sta...
r00024	gene expression in response heat shock - DnaK regulon -mircroarray - Young and Butcher	Stewart GR, Wer...
r00025	gene expression in response heat shock - DnaK and GroE regulon -mircroarray - Young and Butcher	Stewart GR, Wer...
r00026	response to reduced oxygen - microarray - Stocker, Butcher, Marsh	Bacon J, James ...
r00027	adaptation to stationary phase and low-oxygen - genes induced during non-proliferating conditions - microarray - Schoolnik	Voskuil MI, Vis...
r00030	Genes up-regulated in anaerobic as compared to microaerophilic conditions - microarray - Parish	Muttucumaru DG,...
r00031	gene expression in non-replicating state - anerobic - microarray - Parish	Muttucumaru DG,...
r00032	genexpression following progressive nutritions starvations - Marsh and Butcher	Hampshire T, So...
t00001	hypoxia induced dosR dependent genes - microarray - Schoolnik	Park HD, Guinn ...
t00002	oxidative stress, sigH dependent (wt vs delta sigH) - microarray - Schoolnik and Smith	Manganelli R, V...
t00003	LexA/SOS response DNA damage dependent genes - microarry - Davis	Davis EO, Dulla...
t00004	SDS, sigE dependent genes (wt vs delta sigE) - microarray - Schoolnik and Smith	Manganelli R, V...
t00005	oxidative stress, sigH dependent genes, downregulated OD600=0.3 in delta sigH - microarray - Bishai	Kaushal D, Schr...
t00006	oxidative stress, sigH dependent genes, downregulated OD600=0.6 in delta sigH - microarray - Bishai	Kaushal D, Schr...
t00007	oxidative stress, sigH dependent genes, downregulated OD600=1.2 in delta sigH - microarray - Bishai	Kaushal D, Schr...
t00008	upregulated OD600=0.3 in delta sigH - microarray - Bishai	Kaushal D, Schr...
t00009	oxidative stress, sigH dependent genes, upregulated OD600=0.6 in delta sigH - microarray - Bishai	Kaushal D, Schr...
t00010	oxidative stress, sigH dependent genes, upregulated OD600=1.2 in delta sigH - microarray - Bishai	Kaushal D, Schr...
t00011	IdeR- iron-dependent regulator regulated genes - microarray - Schoolnik and Smith	Rodriguez GM, V...
t00012	two component seX3 dependent genes - upregulated in delata seX3,regX3 strain - microarray - Stoker	Parish T, Smith...
t00013	two component seX3 dependent genes - downregulated in delata seX3,regX3 strain - microarray - Stoker	Parish T, Smith...
t00014	dosRS two-component system dependet genes	Parish T, Smith...
t00015	sigC dependet gene set - lethality in mice - microarray - Bishai	Sun R, Converse...
t00016	SigF dependent gene set - microarray - Bishai	Geiman DE, Kaus...
m00001	resuscitation-promoting factor dependent genes - microarray - Mizrahi	Downing KJ, Bet...
m00002	resuscitation-promoting factor dependent genes - microarray - Mizrahi	Downing KJ, Bet...
m00003	resuscitation-promoting factor dependent genes - microarray - Mizrahi	Downing KJ, Bet...
m00004	resuscitation-promoting factor dependent genes - microarray - Mizrahi	Downing KJ, Bet...
m00005	resuscitation-promoting factor dependent genes - microarray - Mizrahi	Downing KJ, Bet...
m00010	stringet response protein rel -upregulated genes in wt vs delta Rel - microarray - Mizrahi and Barry	Dahl JL, Kraus ...
m00011	stringent response protein Rel - upregulated genes in delta Rel vs wt - Mizrahi and Barry	Dahl JL, Kraus ...
m00006	downregulated genes by deletion of RD1 - microarray - Sherman and Behr	Mostowy S, Clet...
m00007	upregulated genes by deletion of RD1 - microarray - Sherman and Behr	Mostowy S, Clet...
m00008	RecA dependent genes - microarray - Rand	Rand L, Hinds J...
m00009	genes differently expressed in a non-virulent strain unable for cord formation - microarray - Small	Gao Q, Kripke K...
r00028	upregulated genes in the presence of H2O2	Schnappinger D,...
r00029	upregulated genes in the presence of palmic acid in the growth medium	Schnappinger D,...
r00034	downregulated genes in the presence of H2O2	Schnappinger D,...
r00035	downregulated genes in the presence of palmica acid in the growth medium	Schnappinger D,...
r00049	100 heat shock proteins identified in the DnaK / GroE regulon study - mircroarray - Young and Butcher	Stewart GR, Wer...
r00047	upregulated genes in response to overexpression of the heat shock protein DnaJ microarray - Young	Stewart GR, Rob...
r00048	downregulated genes in response to overexpression of the heat shock protein DnaJ microarray - Young	Stewart GR, Rob...
r00036	downregulated genes in response to the antimicrobial agents isoniazid - microarray - Besra	Waddell SJ, Sta...
r00037	upregulated genes in response to the antimicrobial agents isoxyl - microarray - Besra	Waddell SJ, Sta...
r00038	downregulated genes in response to the antimicrobial agent isoxyl - microarray - Besra	Waddell SJ, Sta...
r00039	upregulated genes in response to the antimicrobial agent tetrahydrolipstatin (orlistat, xenical) - microarray - Besra	Waddell SJ, Sta...
r00040	downregulated genes in response to the antimicrobial agent tetrahydrolipstatin (orlistat, xenical) - microarray - Besra	Waddell SJ, Sta...
r00041	upregulated genes in response to the antimicrobial agent SRI#221 - microarray - Besra	Waddell SJ, Sta...
r00042	downregulated genes in response to the antimicrobial agent SRI#221 - microarray - Besra	Waddell SJ, Sta...
r00043	upregulated genes in response to the antimicrobial agent SRI#967 - microarray - Besra	Waddell SJ, Sta...
r00044	downregulated genes in response to the antimicrobial agent SRI#976 - microarray - Besra	Waddell SJ, Sta...
r00045	upregulated genes in response to the antimicrobial agent SRI#9190 - microarray - Besra	Waddell SJ, Sta...
r00046	downregulated genes in response to the antimicrobial agent SRI#9190 - microarray - Besra	Waddell SJ, Sta...
r00050	Genes up-regulated in microaerophilic conditions - microarray - Parish	Muttucumaru DG,...
r00051	Genes up-regulated in anerobic conditions - microarray - Parish	Muttucumaru DG,...

Access the regulated proteins/genes via the study name. In the dataset acccess the Mycobacterium tuberculosis Structural Genomics Database entry via the Rv-number and the computational linkages in the Prolinks Database via the gene name. Go Back to Main Page