| ORF | name | Annotation |
| Rv0009 | ppiA | PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) |
| Rv0012 | Rv0012 | PROBABLE CONSERVED MEMBRANE PROTEIN |
| Rv0013 | trpG | POSSIBLE ANTHRANILATE SYNTHASE COMPONENT II TRPG (GLUTAMINE AMIDOTRANSFERASE) |
| Rv0014c | pknB | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) |
| Rv0034 | Rv0034 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0071 | Rv0071 | POSSIBLE MATURASE |
| Rv0076c | Rv0076c | PROBABLE MEMBRANE PROTEIN |
| Rv0078A | Rv0078A | HYPOTHETICAL PROTEIN |
| Rv0082 | Rv0082 | PROBABLE OXIDOREDUCTASE |
| Rv0089 | Rv0089 | POSSIBLE METHYLTRANSFERASE/METHYLASE |
| Rv0132c | fgd2 | PUTATIVE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD2 |
| Rv0217c | lipW | POSSIBLE ESTERASE LIPW |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0254c | cobU | PROBABLE BIFUNCTIONAL COBALAMIN BIOSYNTHESIS PROTEIN COBU: COBINAMIDE KINASE + COBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE |
| Rv0285 | PE5 | PE FAMILY PROTEIN |
| Rv0297 | PE_PGRS5 | PE-PGRS FAMILY PROTEIN |
| Rv0307c | Rv0307c | HYPOTHETICAL PROTEIN |
| Rv0313 | Rv0313 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0356c | Rv0356c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0377 | Rv0377 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LYSR-FAMILY) |
| Rv0383c | Rv0383c | POSSIBLE CONSERVED SECRETED PROTEIN |
| Rv0385 | Rv0385 | PROBABLE MONOOXYGENASE |
| Rv0392c | ndhA | PROBABLE MEMBRANE NADH DEHYDROGENASE NDHA |
| Rv0401 | Rv0401 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0402c | mmpL1 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL1 |
| Rv0402c | mmpL1 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL1 |
| Rv0404 | fadD30 | PROBABLE FATTY-ACID-CoA LIGASE FADD30 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv0406c | Rv0406c | BETA LACTAMASE LIKE PROTEIN |
| Rv0416 | thiS | POSSIBLE PROTEIN THIS |
| Rv0418 | lpqL | PROBABLE LIPOPROTEIN AMINOPEPTIDASE LPQL |
| Rv0419 | lpqM | POSSIBLE LIPOPROTEIN PEPTIDASE LPQM |
| Rv0428c | Rv0428c | HYPOTHETICAL PROTEIN |
| Rv0447c | ufaA1 | PROBABLE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE UFAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) |
| Rv0465c | Rv0465c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0466 | Rv0466 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0472c | Rv0472c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) |
| Rv0487 | Rv0487 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0493c | Rv0493c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0494 | Rv0494 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) |
| Rv0516c | Rv0516c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0518 | Rv0518 | POSSIBLE EXPORTED PROTEIN |
| Rv0522 | gabP | PROBABLE GABA PERMEASE GABP (4-AMINO BUTYRATE TRANSPORT CARRIER) (GAMA-AMINOBUTYRATE PERMEASE) |
| Rv0538 | Rv0538 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0557 | pimB | MANNOSYLTRANSFERASE PIMB |
| Rv0561c | Rv0561c | POSSIBLE OXIDOREDUCTASE |
| Rv0570 | nrdZ | PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) |
| Rv0584 | Rv0584 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv0585c | Rv0585c | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv0661c | Rv0661c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0701 | rplC | PROBABLE 50S RIBOSOMAL PROTEIN L3 RPLC |
| Rv0765c | Rv0765c | PROBABLE OXIDOREDUCTASE |
| Rv0766c | cyp123 | PROBABLE CYTOCHROME P450 123 CYP123 |
| Rv0770 | Rv0770 | PROBABLE DEHYDROGENASE/REDUCTASE |
| Rv0771 | Rv0771 | POSSIBLE 4-CARBOXYMUCONOLACTONE DECARBOXYLASE (CMD) |
| Rv0839 | Rv0839 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0854 | Rv0854 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0859 | fadA | POSSIBLE ACYL-CoA THIOLASE FADA |
| Rv0905 | echA6 | POSSIBLE ENOYL-CoA HYDRATASE ECHA6 (ENOYL HYDRASE) (UNSATURATED ACYL-CoA HYDRATASE) (CROTONASE) |
| Rv0961 | Rv0961 | PROBABLE INTEGRAL MEMBRANE PROTEIN |
| Rv0991c | Rv0991c | CONSERVED HYPOTHETICAL SERINE RICH PROTEIN |
| Rv1013 | pks16 | PUTATIVE POLYKETIDE SYNTHASE PKS16 |
| Rv1240 | mdh | PROBABLE MALATE DEHYDROGENASE MDH |
| Rv1351 | Rv1351 | HYPOTHETICAL PROTEIN |
| Rv1592c | Rv1592c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1623c | cydA | Probable integral membrane cytochrome D ubiquinol oxidase (subunit I) cydA (Cytochrome BD-I oxidase subunit I) |
| Rv1758 | cut1 | PROBABLE CUTINASE CUT1 |
| Rv1767 | Rv1767 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1804c | Rv1804c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1846c | Rv1846c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1852 | ureG | Urease accessory protein ureG |
| Rv1876 | bfrA | PROBABLE BACTERIOFERRITIN BFRA |
| Rv1884c | rpfC | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFC |
| Rv1895 | Rv1895 | POSSIBLE DEHYDROGENASE |
| Rv1914c | Rv1914c | HYPOTHETICAL PROTEIN |
| Rv1976c | Rv1976c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2016 | Rv2016 | HYPOTHETICAL PROTEIN |
| Rv2038c | Rv2038c | Probable sugar-transport ATP-binding protein ABC transporter |
| Rv2056c | rpsN2 | Probable ribosomal protein S14 RpsN2 |
| Rv2220 | glnA1 | GLUTAMINE SYNTHETASE GLNA1 (GLUTAMINE SYNTHASE) (GS-I) |
| Rv2243 | fabD | MALONYL CoA-ACYL CARRIER PROTEIN TRANSACYLASE FABD (Malonyl CoA:AcpM acyltransferase) (MCT) |
| Rv2244 | acpM | MEROMYCOLATE EXTENSION ACYL CARRIER PROTEIN ACPM |
| Rv2245 | kasA | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 1 KASA (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2308 | Rv2308 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2376c | cfp2 | LOW MOLECULAR WEIGHT ANTIGEN CFP2 (LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 2) (CFP-2) |
| Rv2428 | ahpC | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) |
| Rv2455c | Rv2455c | PROBABLE OXIDOREDUCTASE (ALPHA SUBUNIT) |
| Rv2627c | Rv2627c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2633c | Rv2633c | HYPOTHETICAL PROTEIN |
| Rv2731 | Rv2731 | CONSERVED HYPOTHETICAL ALANINE AND ARGININE RICH PROTEIN |
| Rv2812 | Rv2812 | PROBABLE TRANSPOSASE |
| Rv2846c | efpA | POSSIBLE INTEGRAL MEMBRANE EFFLUX PROTEIN EFPA |
| Rv2862c | Rv2862c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3016 | lpqA | PROBABLE LIPOPROTEIN LPQA |
| Rv3017c | esxQ | ESAT-6 LIKE PROTEIN ESXQ (TB12.9) (ESAT-6 LIKE PROTEIN 8) |
| Rv3163c | Rv3163c | POSSIBLE CONSERVED SECRETED PROTEIN |
| Rv3286c | sigF | ALTERNATE RNA POLYMERASE SIGMA FACTOR SIGF |
| Rv3354 | Rv3354 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3418c | groES | 10 KDA CHAPERONIN GROES (PROTEIN CPN10) (PROTEIN GROES) (BCG-A HEAT SHOCK PROTEIN) (10 KDA ANTIGEN) |
| Rv3559c | Rv3559c | PROBABLE OXIDOREDUCTASE |
| Rv3615c | Rv3615c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3675 | Rv3675 | POSSIBLE MEMBRANE PROTEIN |
| Rv3914 | trxC | THIOREDOXIN TRXC (TRX) (MPT46) |