| ORF | name | Annotation |
| Rv0058 | dnaB | PROBABLE REPLICATIVE DNA HELICASE DNAB |
| Rv0129c | fbpC | SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) |
| Rv0183 | Rv0183 | POSSIBLE LYSOPHOSPHOLIPASE |
| Rv0271c | fadE6 | PROBABLE ACYL-CoA DEHYDROGENASE FADE6 |
| Rv0282 | Rv0282 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0312 | Rv0312 | CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN |
| Rv0351 | grpE | PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) |
| Rv0430 | Rv0430 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0491 | regX3 | TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) |
| Rv0616c | Rv0616c | HYPOTHETICAL PROTEIN |
| Rv0647c | Rv0647c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0651 | rplJ | PROBABLE 50S RIBOSOMAL PROTEIN L10 RPLJ |
| Rv0705 | rpsS | PROBABLE 30S RIBOSOMAL PROTEIN S19 RPSS |
| Rv0706 | rplV | PROBABLE 50S RIBOSOMAL PROTEIN L22 RPLV |
| Rv0707 | rpsC | PROBABLE 30S RIBOSOMAL PROTEIN S3 RPSC |
| Rv0710 | rpsQ | PROBABLE 30S RIBOSOMAL PROTEIN S17 RPSQ |
| Rv0803 | purL | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE II PURL (FGAM SYNTHASE II) |
| Rv0839 | Rv0839 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0867c | rpfA | POSSIBLE RESUSCITATION-PROMOTING FACTOR RPFA |
| Rv0916c | PE7 | PE FAMILY PROTEIN |
| Rv0974c | accD2 | PROBABLE ACETYL-/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD2 |
| Rv1116 | Rv1116 | HYPOTHETICAL PROTEIN |
| Rv1148c | Rv1148c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1195 | PE13 | PE FAMILY PROTEIN |
| Rv1199c | Rv1199c | POSSIBLE TRANSPOSASE |
| Rv1252c | lprE | PROBABLE LIPOPROTEIN LPRE |
| Rv1330c | Rv1330c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1346 | fadE14 | POSSIBLE ACYL-CoA DEHYDROGENASE FADE14 |
| Rv1355c | moeY | POSSIBLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEY |
| Rv1433 | Rv1433 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv1457c | Rv1457c | PROBABLE UNIDENTIFIED ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE ABC TRANSPORTER |
| Rv1518 | Rv1518 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1592c | Rv1592c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1713 | engA | PROBABLE GTP-BINDING PROTEIN ENGA |
| Rv1714 | Rv1714 | Probable oxidoreductase |
| Rv1812c | Rv1812c | PROBABLE DEHYDROGENASE |
| Rv1891 | Rv1891 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1942c | Rv1942c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2040c | Rv2040c | Probable sugar-transport integral membrane protein ABC transporter |
| Rv2244 | acpM | MEROMYCOLATE EXTENSION ACYL CARRIER PROTEIN ACPM |
| Rv2274c | Rv2274c | HYPOTHETICAL PROTEIN |
| Rv2308 | Rv2308 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2428 | ahpC | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) |
| Rv2429 | ahpD | ALKYL HYDROPEROXIDE REDUCTASE D PROTEIN AHPD (ALKYL HYDROPEROXIDASE D) |
| Rv2430c | PPE41 | PPE FAMILY PROTEIN |
| Rv2488c | Rv2488c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY) |
| Rv2594c | ruvC | PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE) |
| Rv2650c | Rv2650c | POSSIBLE phiRv2 PROPHAGE PROTEIN |
| Rv2687c | Rv2687c | PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND VALINE RICH PROTEIN ABC TRANSPORTER |
| Rv2757c | Rv2757c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2760c | Rv2760c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2783c | gpsI | BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE + POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) |
| Rv2835c | ugpA | PROBABLE Sn-GLYCEROL-3-PHOSPHATE TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER UGPA |
| Rv2866 | Rv2866 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2988c | leuC | PROBABLE 3-ISOPROPYLMALATE DEHYDRATASE (LARGE SUBUNIT) LEUC (ISOPROPYLMALATE ISOMERASE) (ALPHA-IPM ISOMERASE) (IPMI) |
| Rv3020c | esxS | ESAT-6 LIKE PROTEIN ESXS |
| Rv3023c | Rv3023c | PROBABLE TRANSPOSASE |
| Rv3100c | smpB | PROBABLE SSRA-BINDING PROTEIN SMPB |
| Rv3140 | fadE23 | PROBABLE ACYL-CoA DEHYDROGENASE FADE23 |
| Rv3229c | Rv3229c | POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE) |
| Rv3310 | Rv3310 | POSSIBLE ACID PHOSPHATASE (ACID PHOSPHOMONOESTERASE) (PHOSPHOMONOESTERASE) (GLYCEROPHOSPHATASE) |
| Rv3353c | Rv3353c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3419c | gcp | PROBABLE O-SIALOGLYCOPROTEIN ENDOPEPTIDASE GCP (GLYCOPROTEASE) |
| Rv3586 | Rv3586 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3587c | Rv3587c | PROBABLE CONSERVED MEMBRANE PROTEIN |
| Rv3644c | Rv3644c | POSSIBLE DNA POLYMERASE |
| Rv3711c | dnaQ | PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ |
| Rv3861 | Rv3861 | HYPOTHETICAL PROTEIN |