| ORF | name | Annotation |
| Rv0096 | PPE1 | PPE FAMILY PROTEIN |
| Rv0097 | Rv0097 | POSSIBLE OXIDOREDUCTASE |
| Rv0098 | Rv0098 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0100 | Rv0100 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0101 | nrp | PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE) |
| Rv0103c | ctpB | PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB |
| Rv0516c | Rv0516c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0807 | Rv0807 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1089 | PE10 | PE FAMILY PROTEIN |
| Rv1131 | gltA1 | PROBABLE CITRATE SYNTHASE I GLTA1 |
| Rv1284 | Rv1284 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1470 | trxA | PROBABLE THIOREDOXIN TRXA |
| Rv1622c | cydB | Probable integral membrane cytochrome D ubiquinol oxidase (subunit II) cydB (Cytochrome BD-I oxidase subunit II) |
| Rv1990c | Rv1990c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1996 | Rv1996 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2337c | Rv2337c | HYPOTHETICAL PROTEIN |
| Rv2424c | Rv2424c | PROBABLE TRANSPOSASE |
| Rv2626c | Rv2626c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2633c | Rv2633c | HYPOTHETICAL PROTEIN |
| Rv2638 | Rv2638 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2647 | Rv2647 | HYPOTHETICAL PROTEIN |
| Rv2668 | Rv2668 | POSSIBLE EXPORTED ALANINE AND VALINE RICH PROTEIN |
| Rv2669 | Rv2669 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2780 | ald | SECRETED L-ALANINE DEHYDROGENASE ALD (40 KDA ANTIGEN) (TB43) |
| Rv3572 | Rv3572 | HYPOTHETICAL PROTEIN |
| Rv3660c | Rv3660c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3749c | Rv3749c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3750c | Rv3750c | POSSIBLE EXCISIONASE |
| Rv3846 | sodA | SUPEROXIDE DISMUTASE [FE] SODA |
| Rv3890c | esxC | ESAT-6 LIKE PROTEIN ESXC (ESAT-6 like protein 11) |