| ORF | name | Annotation |
| Rv0116c | Rv0116c | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0282 | Rv0282 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0283 | Rv0283 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0284 | Rv0284 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0285 | PE5 | PE FAMILY PROTEIN |
| Rv0286 | PPE4 | PPE FAMILY PROTEIN |
| Rv0287 | esxG | ESAT-6 LIKE PROTEIN ESXG (CONSERVED HYPOTHETICAL PROTEIN TB9.8) |
| Rv0288 | esxH | LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 7 ESXH (10 kDa ANTIGEN) (CFP-7) (PROTEIN TB10.4) |
| Rv0289 | Rv0289 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0290 | Rv0290 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0291 | mycP3 | PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) |
| Rv0292 | Rv0292 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0587 | yrbE2A | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE2A |
| Rv1344 | Rv1344 | PROBABLE ACYL CARRIER PROTEIN (ACP) |
| Rv1345 | fadD33 | POSSIBLE POLYKETIDE SYNTHASE FADD33 |
| Rv1346 | fadE14 | POSSIBLE ACYL-CoA DEHYDROGENASE FADE14 |
| Rv1348 | Rv1348 | PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER |
| Rv1349 | Rv1349 | PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER |
| Rv1519 | Rv1519 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2123 | PPE37 | PPE FAMILY PROTEIN |
| Rv2384 | mbtA | BIFUNCTIONAL ENZYME MBTA: SALICYL-AMP LIGASE (SAL-AMP LIGASE) + SALICYL-S-ArCP SYNTHETASE |
| Rv2385 | mbtJ | PUTATIVE ACETYL HYDROLASE MBTJ |
| Rv3839 | Rv3839 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3840 | Rv3840 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0450c | mmpL4 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL4 |
| Rv0451c | mmpS4 | PROBABLE CONSERVED MEMBRANE PROTEIN MMPS4 |
| Rv0766c | cyp123 | PROBABLE CYTOCHROME P450 123 CYP123 |
| Rv1343c | lprD | PROBABLE CONSERVED LIPOPROTEIN LPRD |
| Rv1347c | Rv1347c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2122c | hisE | Probable phosphoribosyl-AMP pyrophosphatase HisE |
| Rv2377c | mbtH | PUTATIVE CONSERVED PROTEIN MBTH |
| Rv2378c | mbtG | LYSINE-N-OXYGENASE MBTG (L-LYSINE 6-MONOOXYGENASE) (LYSINE N6-HYDROXYLASE) |
| Rv2379c | mbtF | PEPTIDE SYNTHETASE MBTF (PEPTIDE SYNTHASE) |
| Rv2380c | mbtE | PEPTIDE SYNTHETASE MBTE (PEPTIDE SYNTHASE) |
| Rv2381c | mbtD | POLYKETIDE SYNTHETASE MBTD (POLYKETIDE SYNTHASE) |
| Rv2382c | mbtC | POLYKETIDE SYNTHETASE MBTC (POLYKETIDE SYNTHASE) |
| Rv2383c | mbtB | PHENYLOXAZOLINE SYNTHASE MBTB (PHENYLOXAZOLINE SYNTHETASE) |
| Rv2386c | mbtI | PUTATIVE ISOCHORISMATE SYNTHASE MBTI |
| Rv3402c | Rv3402c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3403c | Rv3403c | HYPOTHETICAL PROTEIN |