| ORF | name | Annotation |
| Rv0035 | fadD34 | PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv0140 | Rv0140 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0141c | Rv0141c | HYPOTHETICAL PROTEIN |
| Rv0142 | Rv0142 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0158 | Rv0158 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) |
| Rv0195 | Rv0195 | POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) |
| Rv0210 | Rv0210 | HYPOTHETICAL PROTEIN |
| Rv0250c | Rv0250c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0259c | Rv0259c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0267 | narU | PROBABLE INTEGRAL MEMBRANE NITRITE EXTRUSION PROTEIN NARU (NITRITE FACILITATOR) |
| Rv0313 | Rv0313 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0350 | dnaK | PROBABLE CHAPERONE PROTEIN DNAK (HEAT SHOCK PROTEIN 70) (HEAT SHOCK 70 KDA PROTEIN) (HSP70) |
| Rv0354c | PPE7 | PPE FAMILY PROTEIN |
| Rv0384c | clpB | PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) |
| Rv0571c | Rv0571c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0584 | Rv0584 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv0602c | tcrA | PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA |
| Rv0614 | Rv0614 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0697 | Rv0697 | PROBABLE DEHYDROGENASE |
| Rv0742 | PE_PGRS8 | PE-PGRS FAMILY PROTEIN |
| Rv0816c | thiX | PROBABLE THIOREDOXIN THIX |
| Rv0943c | Rv0943c | PROBABLE MONOOXYGENASE |
| Rv1026 | Rv1026 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1039c | PPE15 | PPE FAMILY PROTEIN |
| Rv1072 | Rv1072 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv1131 | gltA1 | PROBABLE CITRATE SYNTHASE I GLTA1 |
| Rv1221 | sigE | ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE |
| Rv1258c | Rv1258c | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN |
| Rv1336 | cysM | PROBABLE CYSTEINE SYNTHASE B CYSM (CSASE B) (O-acetylserine sulfhydrylase B) (O-acetylserine (Thiol)-lyase B) |
| Rv1337 | Rv1337 | PROBABLE INTEGRAL MEMBRANE PROTEIN |
| Rv1350 | fabG2 | PROBABLE 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE FABG2 (3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE) |
| Rv1357c | Rv1357c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1466 | Rv1466 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1470 | trxA | PROBABLE THIOREDOXIN TRXA |
| Rv1471 | trxB1 | PROBABLE THIOREDOXIN TRXB1 |
| Rv1482c | Rv1482c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1528c | papA4 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4 |
| Rv1537 | dinX | PROBABLE DNA POLYMERASE IV DINX (POL IV 1) (DNA NUCLEOTIDYLTRANSFERASE (DNA-DIRECTED)) |
| Rv1552 | frdA | PROBABLE FUMARATE REDUCTASE [FLAVOPROTEIN SUBUNIT] FRDA (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) |
| Rv1553 | frdB | PROBABLE FUMARATE REDUCTASE [IRON-SULFUR SUBUNIT] FRDB (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) |
| Rv1554 | frdC | PROBABLE FUMARATE REDUCTASE [MEMBRANE ANCHOR SUBUNIT] FRDC (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) |
| Rv1555 | frdD | PROBABLE FUMARATE REDUCTASE [MEMBRANE ANCHOR SUBUNIT] FRDD (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) |
| Rv1816 | Rv1816 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1824 | Rv1824 | CONSERVED HYPOTHETICAL MEMBRANE PROTEIN |
| Rv1839c | Rv1839c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1847 | Rv1847 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1848 | ureA | Urease gamma subunit ureA (Urea amidohydrolase) |
| Rv1849 | ureB | Urease beta subunit ureB |
| Rv1873 | Rv1873 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1875 | Rv1875 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1892 | Rv1892 | PROBABLE MEMBRANE PROTEIN |
| Rv1900c | lipJ | PROBABLE LIGNIN PEROXIDASE LIPJ |
| Rv1908c | katG | CATALASE-PEROXIDASE-PEROXYNITRITASE T KATG |
| Rv1932 | tpx | PROBABLE THIOL PEROXIDASE TPX |
| Rv1967 | mce3B | MCE-FAMILY PROTEIN MCE3B |
| Rv1974 | Rv1974 | PROBABLE CONSERVED MEMBRANE PROTEIN |
| Rv1996 | Rv1996 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2005c | Rv2005c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2030c | Rv2030c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2089c | pepE | Probable dipeptidase PepE |
| Rv2203 | Rv2203 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv2204c | Rv2204c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2243 | fabD | MALONYL CoA-ACYL CARRIER PROTEIN TRANSACYLASE FABD (Malonyl CoA:AcpM acyltransferase) (MCT) |
| Rv2332 | mez | PROBABLE [NAD] DEPENDENT MALATE OXIDOREDUCTASE MEZ (MALIC ENZYME) (NAD-MALIC ENZYME) (MALATE DEHYDROGENASE (OXALOACETATE DECARBOXYLATING)) (PYRUVIC-MALIC CARBOXYLASE) (NAD-ME) |
| Rv2338c | moeW | POSSIBLE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEW |
| Rv2339 | mmpL9 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL9 |
| Rv2397c | cysA1 | PROBABLE SULFATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER CYSA1 |
| Rv2398c | cysW | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYSW |
| Rv2399c | cysT | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYST |
| Rv2411c | Rv2411c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2465c | Rv2465c | PROBABLE ISOMERASE |
| Rv2623 | TB31.7 | CONSERVED HYPOTHETICAL PROTEIN TB31.7 |
| Rv2624c | Rv2624c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2625c | Rv2625c | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN |
| Rv2699c | Rv2699c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2710 | sigB | RNA POLYMERASE SIGMA FACTOR SIGB |
| Rv2759c | Rv2759c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2816c | Rv2816c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2931 | ppsA | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSA |
| Rv3047c | Rv3047c | HYPOTHETICAL PROTEIN |
| Rv3068c | pgmA | PROBABLE PHOSPHOGLUCOMUTASE PGMA (GLUCOSE PHOSPHOMUTASE) (PGM) |
| Rv3206c | moeB1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOEB1 (MPT-SYNTHASE SULFURYLASE) (MOLYBDOPTERIN SYNTHASE SULPHURYLASE) |
| Rv3221A | Rv3221A | POSSIBLE ANTI-SIGMA FACTOR |
| Rv3222c | Rv3222c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3223c | sigH | ALTERNATIVE RNA POLYMERASE SIGMA-E FACTOR (SIGMA-24) SIGH (RPOE) |
| Rv3320c | Rv3320c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3321c | Rv3321c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3351c | Rv3351c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3357 | Rv3357 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3418c | groES | 10 KDA CHAPERONIN GROES (PROTEIN CPN10) (PROTEIN GROES) (BCG-A HEAT SHOCK PROTEIN) (10 KDA ANTIGEN) |
| Rv3439c | Rv3439c | CONSERVED HYPOTHETICAL ALANINE AND PROLINE RICH PROTEIN |
| Rv3449 | mycP4 | PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP4 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-4) |
| Rv3463 | Rv3463 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3486 | Rv3486 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3492c | Rv3492c | CONSERVED HYPOTHETICAL MCE ASSOCIATED PROTEIN |
| Rv3735 | Rv3735 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3766 | Rv3766 | HYPOTHETICAL PROTEIN |
| Rv3822 | Rv3822 | |
| Rv3824c | papA1 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA1 |
| Rv3825c | pks2 | PROBABLE POLYKETIDE SYNTHASE PKS2 |
| Rv3830c | Rv3830c | TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv3904c | esxE | PUTATIVE ESAT-6 LIKE PROTEIN ESXE (HYPOTHETICAL ALANINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 12) |
| Rv3913 | trxB2 | PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR) |
| Rv3914 | trxC | THIOREDOXIN TRXC (TRX) (MPT46) |