| ORF | name | Annotation |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0465c | Rv0465c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0467 | icl | ISOCITRATE LYASE ICL (ISOCITRASE) (ISOCITRATASE) |
| Rv0468 | fadB2 | PROBABLE 3-HYDROXYBUTYRYL-CoA DEHYDROGENASE FADB2 (BETA-HYDROXYBUTYRYL-CoA DEHYDROGENASE) (BHBD) |
| Rv0516c | Rv0516c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0563 | htpX | PROBABLE PROTEASE TRANSMEMBRANE PROTEIN HEAT SHOCK PROTEIN HTPX |
| Rv0981 | mprA | MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) |
| Rv0982 | mprB | PROBABLE TWO COMPONENT SENSOR KINASE MPRB |
| Rv0983 | pepD | PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B) |
| Rv0984 | moaB2 | POSSIBLE PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE MOAB2 (PHS) (4-ALPHA- HYDROXY-TETRAHYDROPTERIN DEHYDRATASE) (PTERIN-4-A-CARBINOLAMINE DEHYDRATASE) (PHENYLALANINE HYDROXYLASE-STIMULATING PROTEIN) (PHS) (PTERIN CARBINOLAMINE DEHYDRATASE) (PCD) |
| Rv0997 | Rv0997 | HYPOTHETICAL PROTEIN |
| Rv1057 | Rv1057 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1129c | Rv1129c | PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN |
| Rv1130 | Rv1130 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1131 | gltA1 | PROBABLE CITRATE SYNTHASE I GLTA1 |
| Rv1221 | sigE | ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE |
| Rv1285 | cysD | PROBABLE SULFATE ADENYLYLTRANSFERASE SUBUNIT 2 CYSD |
| Rv1286 | cysN | PROBABLE BIFUNCTIONAL ENZYME CYSN/CYSC: SULFATE ADENYLTRANSFERASE (SUBUNIT 1) + ADENYLYLSULFATE KINASE |
| Rv1329c | dinG | PROBABLE ATP-DEPENDENT HELICASE DING |
| Rv2052c | Rv2052c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2053c | Rv2053c | PROBABLE TRANSMEMBRANE PROTEIN |
| Rv2710 | sigB | RNA POLYMERASE SIGMA FACTOR SIGB |
| Rv2743c | Rv2743c | POSSIBLE CONSERVED TRANSMEMBRANE ALANINE RICH PROTEIN |
| Rv2744c | 35kd_ag | CONSERVED 35 KDA ALANINE RICH PROTEIN |
| Rv2745c | Rv2745c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv3139 | fadE24 | PROBABLE ACYL-CoA DEHYDROGENASE FADE24 |
| Rv3140 | fadE23 | PROBABLE ACYL-CoA DEHYDROGENASE FADE23 |