| ORF | name | Annotation |
| Rv0071 | Rv0071 | POSSIBLE MATURASE |
| Rv0336 | Rv0336 | CONSERVED 13E12 REPEAT FAMILY PROTEIN |
| Rv0515 | Rv0515 | CONSERVED 13E12 REPEAT FAMILY PROTEIN |
| Rv1000c | Rv1000c | CONSERVED HYPOTHETICAL PROTEIN. THOUGHT TO BE REGULATED BY Rv2720|LEXA. |
| Rv1378c | Rv1378c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1702c | Rv1702c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2100 | Rv2100 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2578c | Rv2578c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2579 | dhaA | POSSIBLE HALOALKANE DEHALOGENASE DHAA (1-CHLOROHEXANE HALIDOHYDROLASE) |
| Rv2594c | ruvC | PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE) |
| Rv2719c | Rv2719c | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv2720 | lexA | REPRESSOR LEXA |
| Rv2737c | recA | RECA PROTEIN (RECOMBINASE A) [CONTAINS: ENDONUCLEASE PI-MTUI (MTU RECA INTEIN)]. |
| Rv3074 | Rv3074 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3370c | dnaE2 | PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA NUCLEOTIDYLTRANSFERASE) |
| Rv3395c | Rv3395c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3776 | Rv3776 | CONSERVED HYPOTHETICAL PROTEIN |