| ORF | name | Annotation |
| Rv0142 | Rv0142 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0180c | Rv0180c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0355c | PPE8 | PPE FAMILY PROTEIN |
| Rv0384c | clpB | PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) |
| Rv0740 | Rv0740 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0991c | Rv0991c | CONSERVED HYPOTHETICAL SERINE RICH PROTEIN |
| Rv1221 | sigE | ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE |
| Rv1334 | Rv1334 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1335 | Rv1335 | 9.5 KDA CULTURE FILTRATE ANTIGEN CFP10A |
| Rv1336 | cysM | PROBABLE CYSTEINE SYNTHASE B CYSM (CSASE B) (O-acetylserine sulfhydrylase B) (O-acetylserine (Thiol)-lyase B) |
| Rv1337 | Rv1337 | PROBABLE INTEGRAL MEMBRANE PROTEIN |
| Rv1338 | murI | PROBABLE GLUTAMATE RACEMASE MURI |
| Rv1471 | trxB1 | PROBABLE THIOREDOXIN TRXB1 |
| Rv1472 | echA12 | POSSIBLE ENOYL-CoA HYDRATASE ECHA12 (ENOYL HYDRASE) (UNSATURATED ACYL-CoA HYDRATASE) (CROTONASE) |
| Rv1528c | papA4 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4 |
| Rv1645c | Rv1645c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1767 | Rv1767 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1874 | Rv1874 | HYPOTHETICAL PROTEIN |
| Rv1992c | ctpG | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE G CTPG |
| Rv1993c | Rv1993c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2397c | cysA1 | PROBABLE SULFATE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER CYSA1 |
| Rv2398c | cysW | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYSW |
| Rv2399c | cysT | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYST |
| Rv2453c | mobA | PROBABLE MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN A MOBA |
| Rv2454c | Rv2454c | PROBABLE OXIDOREDUCTASE (BETA SUBUNIT) |
| Rv2465c | Rv2465c | PROBABLE ISOMERASE |
| Rv2466c | Rv2466c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2698 | Rv2698 | PROBABLE CONSERVED ALANINE RICH TRANSMEMBRANE PROTEIN |
| Rv2699c | Rv2699c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2706c | Rv2706c | HYPOTHETICAL PROTEIN |
| Rv2710 | sigB | RNA POLYMERASE SIGMA FACTOR SIGB |
| Rv3054c | Rv3054c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3206c | moeB1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOEB1 (MPT-SYNTHASE SULFURYLASE) (MOLYBDOPTERIN SYNTHASE SULPHURYLASE) |
| Rv3222c | Rv3222c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3223c | sigH | ALTERNATIVE RNA POLYMERASE SIGMA-E FACTOR (SIGMA-24) SIGH (RPOE) |
| Rv3463 | Rv3463 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3464 | rmlB | dTDP-GLUCOSE 4,6-DEHYDRATASE RMLB |
| Rv3465 | rmlC | dTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE RMLC (dTDP-4-KETO-6-DEOXYGLUCOSE 3,5-EPIMERASE) (dTDP-L-RHAMNOSE SYNTHETASE) (THYMIDINE DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE) |
| Rv3913 | trxB2 | PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR) |
| Rv3914 | trxC | THIOREDOXIN TRXC (TRX) (MPT46) |