| ORF | name | Annotation |
| Rv0004 | Rv0004 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0028 | Rv0028 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0070c | glyA2 | PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) |
| Rv0072 | Rv0072 | PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER |
| Rv0079 | Rv0079 | HYPOTHETICAL PROTEIN |
| Rv0080 | Rv0080 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0112 | gca | POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA (GDP-D-MANNOSE DEHYDRATASE) |
| Rv0121c | Rv0121c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0176 | Rv0176 | PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN |
| Rv0183 | Rv0183 | POSSIBLE LYSOPHOSPHOLIPASE |
| Rv0196 | Rv0196 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0213c | Rv0213c | POSSIBLE METHYLTRANSFERASE (METHYLASE) |
| Rv0244c | fadE5 | PROBABLE ACYL-CoA DEHYDROGENASE FADE5 |
| Rv0249c | Rv0249c | PROBABLE SUCCINATE DEHYDROGENASE [MEMBRANE ANCHOR SUBUNIT] (SUCCINIC DEHYDROGENASE) |
| Rv0315 | Rv0315 | POSSIBLE BETA-1,3-GLUCANASE PRECURSOR |
| Rv0356c | Rv0356c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0377 | Rv0377 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LYSR-FAMILY) |
| Rv0420c | Rv0420c | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv0467 | icl | ISOCITRATE LYASE ICL (ISOCITRASE) (ISOCITRATASE) |
| Rv0526 | Rv0526 | POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) |
| Rv0570 | nrdZ | PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) |
| Rv0572c | Rv0572c | HYPOTHETICAL PROTEIN |
| Rv0574c | Rv0574c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0611c | Rv0611c | HYPOTHETICAL PROTEIN |
| Rv0619 | galTb | PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTB [SECOND PART] |
| Rv0635 | Rv0635 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0696 | Rv0696 | PROBABLE MEMBRANE SUGAR TRANSFERASE |
| Rv0773c | ggtA | PROBABLE BIFUNCTIONAL ACYLASE GGTA: CEPHALOSPORIN ACYLASE (GL-7ACA ACYLASE) + GAMMA-GLUTAMYLTRANSPEPTIDASE (GGT) |
| Rv0847 | lpqS | PROBABLE LIPOPROTEIN LPQS |
| Rv0848 | cysK2 | POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) |
| Rv0867c | rpfA | POSSIBLE RESUSCITATION-PROMOTING FACTOR RPFA |
| Rv0885 | Rv0885 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0892 | Rv0892 | PROBABLE MONOOXYGENASE |
| Rv0954 | Rv0954 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0958 | Rv0958 | POSSIBLE MAGNESIUM CHELATASE |
| Rv0967 | Rv0967 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0968 | Rv0968 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0970 | Rv0970 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv0991c | Rv0991c | CONSERVED HYPOTHETICAL SERINE RICH PROTEIN |
| Rv1042c | Rv1042c | PROBABLE IS LIKE-2 TRANSPOSASE |
| Rv1047 | Rv1047 | PROBABLE TRANSPOSASE |
| Rv1065 | Rv1065 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1115 | Rv1115 | POSSIBLE EXPORTED PROTEIN |
| Rv1144 | Rv1144 | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE |
| Rv1168c | PPE17 | PPE FAMILY PROTEIN |
| Rv1169c | PE11 | PE FAMILY PROTEIN |
| Rv1195 | PE13 | PE FAMILY PROTEIN |
| Rv1199c | Rv1199c | POSSIBLE TRANSPOSASE |
| Rv1211 | Rv1211 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1222 | Rv1222 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1268c | Rv1268c | HYPOTHETICAL PROTEIN |
| Rv1327c | glgE | PROBABLE GLUCANASE GLGE |
| Rv1344 | Rv1344 | PROBABLE ACYL CARRIER PROTEIN (ACP) |
| Rv1347c | Rv1347c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1374c | Rv1374c | HYPOTHETICAL PROTEIN |
| Rv1454c | qor | PROBABLE QUINONE REDUCTASE QOR (NADPH:quinone reductase) (Zeta-crystallin homolog protein) |
| Rv1500 | Rv1500 | PROBABLE GLYCOSYLTRANSFERASE |
| Rv1519 | Rv1519 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1525 | wbbL2 | POSSIBLE RHAMNOSYL TRANSFERASE WBBL2 |
| Rv1629 | polA | PROBABLE DNA POLYMERASE I POLA |
| Rv1733c | Rv1733c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv1734c | Rv1734c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1735c | Rv1735c | HYPOTHETICAL MEMBRANE PROTEIN |
| Rv1737c | narK2 | POSSIBLE NITRATE/NITRITE TRANSPORTER NARK2 |
| Rv1738 | Rv1738 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1739c | Rv1739c | PROBABLE SULPHATE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER |
| Rv1780 | Rv1780 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1800 | PPE28 | PPE FAMILY PROTEIN |
| Rv1812c | Rv1812c | PROBABLE DEHYDROGENASE |
| Rv1813c | Rv1813c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1857 | modA | PROBABLE MOLYBDATE-BINDING LIPOPROTEIN MODA |
| Rv1929c | Rv1929c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1976c | Rv1976c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1979c | Rv1979c | POSSIBLE CONSERVED PERMEASE |
| Rv1983 | PE_PGRS35 | PE-PGRS FAMILY PROTEIN |
| Rv1996 | Rv1996 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1997 | ctpF | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF |
| Rv1998c | Rv1998c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2003c | Rv2003c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2004c | Rv2004c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2005c | Rv2005c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2006 | otsB1 | PROBABLE TREHALOSE-6-PHOSPHATE PHOSPHATASE OTSB1 (TREHALOSE-PHOSPHATASE) (TPP) |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2008c | Rv2008c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2010 | Rv2010 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2028c | Rv2028c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2029c | pfkB | Probable phosphofructokinase PfkB (PHOSPHOHEXOKINASE) |
| Rv2030c | Rv2030c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2031c | hspX | HEAT SHOCK PROTEIN HSPX (ALPHA-CRSTALLIN HOMOLOG) (14 kDa ANTIGEN) (HSP16.3) |
| Rv2032 | acg | Conserved hypothetical protein Acg |
| Rv2077c | Rv2077c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2087 | Rv2087 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2114 | Rv2114 | HYPOTHETICAL PROTEIN |
| Rv2168c | Rv2168c | PROBABLE TRANSPOSASE |
| Rv2261c | Rv2261c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2264c | Rv2264c | conserved hypothetical proline rich protein |
| Rv2274c | Rv2274c | HYPOTHETICAL PROTEIN |
| Rv2329c | narK1 | PROBABLE NITRITE EXTRUSION PROTEIN 1 NARK1 (NITRITE FACILITATOR 1) |
| Rv2385 | mbtJ | PUTATIVE ACETYL HYDROLASE MBTJ |
| Rv2386c | mbtI | PUTATIVE ISOCHORISMATE SYNTHASE MBTI |
| Rv2414c | Rv2414c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2418c | Rv2418c | HYPOTHETICAL PROTEIN |
| Rv2423 | Rv2423 | HYPOTHETICAL PROTEIN |
| Rv2429 | ahpD | ALKYL HYDROPEROXIDE REDUCTASE D PROTEIN AHPD (ALKYL HYDROPEROXIDASE D) |
| Rv2431c | PE25 | PE FAMILY PROTEIN |
| Rv2450c | rpfE | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFE |
| Rv2479c | Rv2479c | PROBABLE TRANSPOSASE |
| Rv2482c | plsB2 | PROBABLE GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE PLSB2 (GPAT) |
| Rv2512c | Rv2512c | TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1081 |
| Rv2543 | lppA | PROBABLE CONSERVED LIPOPROTEIN LPPA |
| Rv2623 | TB31.7 | CONSERVED HYPOTHETICAL PROTEIN TB31.7 |
| Rv2624c | Rv2624c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2625c | Rv2625c | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN |
| Rv2626c | Rv2626c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2627c | Rv2627c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2628 | Rv2628 | HYPOTHETICAL PROTEIN |
| Rv2629 | Rv2629 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2630 | Rv2630 | HYPOTHETICAL PROTEIN |
| Rv2631 | Rv2631 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2666 | Rv2666 | PROBABLE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1081 (FRAGMENT) |
| Rv2706c | Rv2706c | HYPOTHETICAL PROTEIN |
| Rv2879c | Rv2879c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2929 | Rv2929 | HYPOTHETICAL PROTEIN |
| Rv2930 | fadD26 | FATTY-ACID-CoA LIGASE FADD26 (FATTY-ACID-COA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv2931 | ppsA | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSA |
| Rv2933 | ppsC | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSC |
| Rv2938 | drrC | PROBABLE DAUNORUBICIN-DIM-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER DRRC |
| Rv2949c | Rv2949c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2950c | fadD29 | PROBABLE FATTY-ACID-CoA LIGASE FADD29 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv2963 | Rv2963 | PROBABLE INTEGRAL MEMBRANE PROTEIN |
| Rv3023c | Rv3023c | PROBABLE TRANSPOSASE |
| Rv3048c | nrdF2 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) |
| Rv3049c | Rv3049c | PROBABLE MONOOXYGENASE |
| Rv3115 | Rv3115 | PROBABLE TRANSPOSASE |
| Rv3126c | Rv3126c | HYPOTHETICAL PROTEIN |
| Rv3127 | Rv3127 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3128c | Rv3128c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3129 | Rv3129 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3130c | Rv3130c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3131 | Rv3131 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3132c | devS | TWO COMPONENT SENSOR HISTIDINE KINASE DEVS |
| Rv3133c | devR/dosR | TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY LUXR/UHPA-FAMILY) |
| Rv3134c | Rv3134c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3135 | PPE50 | PPE FAMILY PROTEIN |
| Rv3137 | Rv3137 | PROBABLE MONOPHOSPHATASE |
| Rv3172c | Rv3172c | HYPOTHETICAL PROTEIN |
| Rv3219 | whiB1 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB1 |
| Rv3251c | rubA | PROBABLE RUBREDOXIN RUBA |
| Rv3252c | alkB | PROBABLE TRANSMEMBRANE ALKANE 1-MONOOXYGENASE ALKB (ALKANE 1-HYDROXYLASE) (LAURIC ACID OMEGA-HYDROXYLASE) (OMEGA-HYDROXYLASE) (FATTY ACID OMEGA-HYDROXYLASE) (ALKANE HYDROXYLASE-RUBREDOXIN) |
| Rv3269 | Rv3269 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3288c | usfY | PUTATIVE PROTEIN USFY |
| Rv3337 | Rv3337 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3416 | whiB3 | TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB3 |
| Rv3425 | PPE57 | PPE FAMILY PROTEIN |
| Rv3489 | Rv3489 | HYPOTHETICAL PROTEIN |
| Rv3534c | Rv3534c | PROBABLE 4-HYDROXY-2-OXOVALERATE ALDOLASE (HOA) |
| Rv3686c | Rv3686c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3690 | Rv3690 | PROBABLE CONSERVED MEMBRANE PROTEIN |
| Rv3707c | Rv3707c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3741c | Rv3741c | POSSIBLE OXIDOREDUCTASE |
| Rv3751 | Rv3751 | PROBABLE INTEGRASE (FRAGMENT) |
| Rv3786c | Rv3786c | HYPOTHETICAL PROTEIN |
| Rv3899c | Rv3899c | CONSERVED HYPOTHETICAL PROTEIN |