| ORF | name | Annotation |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv3054c | Rv3054c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0350 | dnaK | PROBABLE CHAPERONE PROTEIN DNAK (HEAT SHOCK PROTEIN 70) (HEAT SHOCK 70 KDA PROTEIN) (HSP70) |
| Rv0351 | grpE | PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) |
| Rv0352 | dnaJ1 | PROBABLE CHAPERONE PROTEIN DNAJ1 |
| Rv2913c | Rv2913c | POSSIBLE D-AMINO ACID AMINOHYDROLASE (D-AMINO ACID HYDROLASE) |
| Rv0384c | clpB | PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) |
| Rv2466c | Rv2466c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1954c | Rv1954c | HYPOTHETICAL PROTEIN |
| Rv3654c | Rv3654c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2745c | Rv2745c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1169c | PE11 | PE FAMILY PROTEIN |
| Rv1048c | Rv1048c | HYPOTHETICAL PROTEIN |
| Rv3418c | groES | 10 KDA CHAPERONIN GROES (PROTEIN CPN10) (PROTEIN GROES) (BCG-A HEAT SHOCK PROTEIN) (10 KDA ANTIGEN) |
| Rv0767c | Rv0767c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2710 | sigB | RNA POLYMERASE SIGMA FACTOR SIGB |
| Rv0654 | Rv0654 | PROBABLE DIOXYGENASE |
| Rv0475 | hbhA | IRON-REGULATED HEPARIN BINDING HEMAGGLUTININ HBHA (ADHESIN) |
| Rv0991c | Rv0991c | CONSERVED HYPOTHETICAL SERINE RICH PROTEIN |
| Rv0768 | aldA | PROBABLE ALDEHYDE DEHYDROGENASE NAD DEPENDENT ALDA (ALDEHYDE DEHYDROGENASE [NAD+]) |
| Rv2987c | leuD | PROBABLE 3-ISOPROPYLMALATE DEHYDRATASE (SMALL SUBUNIT) LEUD (ISOPROPYLMALATE ISOMERASE) (ALPHA-IPM ISOMERASE) (IPMI) |
| Rv0769 | Rv0769 | PROBABLE DEHYDROGENASE/REDUCTASE |
| Rv3463 | Rv3463 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0753c | mmsA | PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE MMSA (METHYLMALONIC ACID SEMIALDEHYDE DEHYDROGENASE) (MMSDH) |
| Rv0563 | htpX | PROBABLE PROTEASE TRANSMEMBRANE PROTEIN HEAT SHOCK PROTEIN HTPX |
| Rv3334 | Rv3334 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MERR-FAMILY) |
| Rv0440 | groEL2 | 60 KDA CHAPERONIN 2 GROEL2 (PROTEIN CPN60-2) (GROEL PROTEIN 2) (65 KDA ANTIGEN) (HEAT SHOCK PROTEIN 65) (CELL WALL PROTEIN A) (ANTIGEN A) |
| Rv2016 | Rv2016 | HYPOTHETICAL PROTEIN |
| Rv3206c | moeB1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOEB1 (MPT-SYNTHASE SULFURYLASE) (MOLYBDOPTERIN SYNTHASE SULPHURYLASE) |
| Rv0140 | Rv0140 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0827c | Rv0827c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2988c | leuC | PROBABLE 3-ISOPROPYLMALATE DEHYDRATASE (LARGE SUBUNIT) LEUC (ISOPROPYLMALATE ISOMERASE) (ALPHA-IPM ISOMERASE) (IPMI) |
| Rv2017 | Rv2017 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv3061c | fadE22 | PROBABLE ACYL-CoA DEHYDROGENASE FADE22 |
| Rv0752c | fadE9 | PROBABLE ACYL-CoA DEHYDROGENASE FADE9 |
| Rv2012 | Rv2012 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2989 | Rv2989 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2706c | Rv2706c | HYPOTHETICAL PROTEIN |
| Rv0581 | Rv0581 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0474 | Rv0474 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1471 | trxB1 | PROBABLE THIOREDOXIN TRXB1 |
| Rv2050 | Rv2050 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1955 | Rv1955 | HYPOTHETICAL PROTEIN |
| Rv2025c | Rv2025c | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv1285 | cysD | PROBABLE SULFATE ADENYLYLTRANSFERASE SUBUNIT 2 CYSD |
| Rv2699c | Rv2699c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2517c | Rv2517c | HYPOTHETICAL PROTEIN |
| Rv2744c | 35kd_ag | CONSERVED 35 KDA ALANINE RICH PROTEIN |
| Rv2698 | Rv2698 | PROBABLE CONSERVED ALANINE RICH TRANSMEMBRANE PROTEIN |
| Rv2912c | Rv2912c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv0250c | Rv0250c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3914 | trxC | THIOREDOXIN TRXC (TRX) (MPT46) |
| Rv2053c | Rv2053c | PROBABLE TRANSMEMBRANE PROTEIN |
| Rv0921 | Rv0921 | POSSIBLE RESOLVASE |
| Rv0383c | Rv0383c | POSSIBLE CONSERVED SECRETED PROTEIN |
| Rv2204c | Rv2204c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0347 | Rv0347 | PROBABLE CONSERVED MEMBRANE PROTEIN |
| Rv2694c | Rv2694c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0990c | Rv0990c | HYPOTHETICAL PROTEIN |
| Rv3417c | groEL1 | 60 KDA CHAPERONIN 1 GROEL1 (PROTEIN CPN60-1) (GROEL PROTEIN 1) |
| Rv1221 | sigE | ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE |
| Rv2516c | Rv2516c | HYPOTHETICAL PROTEIN |
| Rv0766c | cyp123 | PROBABLE CYTOCHROME P450 123 CYP123 |
| Rv0839 | Rv0839 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0826 | Rv0826 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3515c | fadD19 | PROBABLE FATTY-ACID-CoA LIGASE FADD19 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv1989c | Rv1989c | HYPOTHETICAL PROTEIN |
| Rv2711 | ideR | IRON-DEPENDENT REPRESSOR AND ACTIVATOR IDER |
| Rv3139 | fadE24 | PROBABLE ACYL-CoA DEHYDROGENASE FADE24 |
| Rv2660c | Rv2660c | HYPOTHETICAL PROTEIN |
| Rv3913 | trxB2 | PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR) |
| Rv3223c | sigH | ALTERNATIVE RNA POLYMERASE SIGMA-E FACTOR (SIGMA-24) SIGH (RPOE) |
| Rv2840c | Rv2840c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0792c | Rv0792c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) |
| Rv1049 | Rv1049 | PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN |
| Rv0757 | phoP | POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP |
| Rv2839c | infB | PROBABLE TRANSLATION INITIATION FACTOR IF-2 INFB |
| Rv0790c | Rv0790c | HYPOTHETICAL PROTEIN |
| Rv1528c | papA4 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4 |
| Rv0770 | Rv0770 | PROBABLE DEHYDROGENASE/REDUCTASE |
| Rv3841 | bfrB | POSSIBLE BACTERIOFERRITIN BFRB |
| Rv0367c | Rv0367c | HYPOTHETICAL PROTEIN |
| Rv2373c | dnaJ2 | PROBABLE CHAPERONE PROTEIN DNAJ2 |
| Rv1335 | Rv1335 | 9.5 KDA CULTURE FILTRATE ANTIGEN CFP10A |
| Rv3060c | Rv3060c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) |
| Rv3597c | lsr2 | PROBABLE IRON-REGULATED LSR2 PROTEIN PRECURSOR |
| Rv2011c | Rv2011c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2659c | Rv2659c | PROBABLE phiRv2 PROPHAGE INTEGRASE |
| Rv1286 | cysN | PROBABLE BIFUNCTIONAL ENZYME CYSN/CYSC: SULFATE ADENYLTRANSFERASE (SUBUNIT 1) + ADENYLYLSULFATE KINASE |
| Rv2777c | Rv2777c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0550c | Rv0550c | HYPOTHETICAL PROTEIN |
| Rv0136 | cyp138 | PROBABLE CYTOCHROME P450 138 CYP138 |
| Rv0452 | Rv0452 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0331 | Rv0331 | POSSIBLE DEHYDROGENASE/REDUCTASE |
| Rv1073 | Rv1073 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3505 | fadE27 | PROBABLE ACYL-CoA DEHYDROGENASE FADE27 |
| Rv3082c | virS | VIRULENCE-REGULATING TRANSCRIPTIONAL REGULATOR VIRS (ARAC/XYLS FAMILY) |
| Rv0211 | pckA | PROBABLE IRON-REGULATED PHOSPHOENOLPYRUVATE CARBOXYKINASE [GTP] PCKA (PHOSPHOENOLPYRUVATE CARBOXYLASE) (PEPCK)(PEP CARBOXYKINASE) |
| Rv0188 | Rv0188 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |