| ORF | name | Annotation |
| Rv0090 | Rv0090 | POSSIBLE MEMBRANE PROTEIN |
| Rv0119 | fadD7 | PROBABLE FATTY-ACID-CoA LIGASE FADD7 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv0142 | Rv0142 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0182c | sigG | PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGG (RNA POLYMERASE ECF TYPE SIGMA FACTOR) |
| Rv0186 | bglS | PROBABLE BETA-GLUCOSIDASE BGLS (GENTIOBIASE) (CELLOBIASE) (BETA-D-GLUCOSIDE GLUCOHYDROLASE) |
| Rv0235c | Rv0235c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0278c | PE_PGRS3 | PE-PGRS FAMILY PROTEIN |
| Rv0279c | PE_PGRS4 | PE-PGRS FAMILY PROTEIN |
| Rv0522 | gabP | PROBABLE GABA PERMEASE GABP (4-AMINO BUTYRATE TRANSPORT CARRIER) (GAMA-AMINOBUTYRATE PERMEASE) |
| Rv0560c | Rv0560c | POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) |
| Rv0569 | Rv0569 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0570 | nrdZ | PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) |
| Rv0571c | Rv0571c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0618 | galTa | PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTA [FIRST PART] |
| Rv0847 | lpqS | PROBABLE LIPOPROTEIN LPQS |
| Rv0848 | cysK2 | POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) |
| Rv1011 | ispE | Probable 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase ISPE (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) |
| Rv1157c | Rv1157c | CONSERVED HYPOTHETICAL ALA-, PRO-RICH PROTEIN |
| Rv1158c | Rv1158c | CONSERVED HYPOTHETICAL ALA-, PRO-RICH PROTEIN |
| Rv1387 | PPE20 | PPE FAMILY PROTEIN |
| Rv1718 | Rv1718 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1813c | Rv1813c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1833c | Rv1833c | Possible haloalkane dehalogenase |
| Rv1866 | Rv1866 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2100 | Rv2100 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2490c | PE_PGRS43 | PE-PGRS FAMILY PROTEIN |
| Rv2628 | Rv2628 | HYPOTHETICAL PROTEIN |
| Rv2768c | PPE43 | PPE FAMILY PROTEIN |
| Rv3341 | metA | PROBABLE HOMOSERINE O-ACETYLTRANSFERASE META (HOMOSERINE O-TRANS-ACETYLASE) (HOMOSERINE TRANSACETYLASE) (HTA) |
| Rv3585 | radA | DNA REPAIR PROTEIN RADA (DNA REPAIR PROTEIN SMS) |