| ORF | name | Annotation |
| Rv0002 | dnaN | DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE) |
| Rv0006 | gyrA | DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) |
| Rv0009 | ppiA | PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) |
| Rv0011c | Rv0011c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0013 | trpG | POSSIBLE ANTHRANILATE SYNTHASE COMPONENT II TRPG (GLUTAMINE AMIDOTRANSFERASE) |
| Rv0247c | Rv0247c | PROBABLE SUCCINATE DEHYDROGENASE [IRON-SULFUR SUBUNIT] (SUCCINIC DEHYDROGENASE) |
| Rv0306 | Rv0306 | PUTATIVE OXIDOREDUCTASE |
| Rv0350 | dnaK | PROBABLE CHAPERONE PROTEIN DNAK (HEAT SHOCK PROTEIN 70) (HEAT SHOCK 70 KDA PROTEIN) (HSP70) |
| Rv0351 | grpE | PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) |
| Rv0352 | dnaJ1 | PROBABLE CHAPERONE PROTEIN DNAJ1 |
| Rv0353 | hspR | PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REPRESSOR HSPR (MERR FAMILY) |
| Rv0440 | groEL2 | 60 KDA CHAPERONIN 2 GROEL2 (PROTEIN CPN60-2) (GROEL PROTEIN 2) (65 KDA ANTIGEN) (HEAT SHOCK PROTEIN 65) (CELL WALL PROTEIN A) (ANTIGEN A) |
| Rv1072 | Rv1072 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv1560 | Rv1560 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1561 | Rv1561 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2201 | asnB | Probable asparagine synthetase AsnB |
| Rv2360c | Rv2360c | HYPOTHETICAL PROTEIN |
| Rv2434c | Rv2434c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2571c | Rv2571c | PROBABLE TRANSMEMBRANE ALANINE AND VALINE AND LEUCINE RICH PROTEIN |
| Rv2621c | Rv2621c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2692 | ceoC | TRK SYSTEM POTASSIUM UPTAKE PROTEIN CEOC |
| Rv3100c | smpB | PROBABLE SSRA-BINDING PROTEIN SMPB |
| Rv3250c | rubB | PROBABLE RUBREDOXIN RUBB |
| Rv3251c | rubA | PROBABLE RUBREDOXIN RUBA |
| Rv3252c | alkB | PROBABLE TRANSMEMBRANE ALKANE 1-MONOOXYGENASE ALKB (ALKANE 1-HYDROXYLASE) (LAURIC ACID OMEGA-HYDROXYLASE) (OMEGA-HYDROXYLASE) (FATTY ACID OMEGA-HYDROXYLASE) (ALKANE HYDROXYLASE-RUBREDOXIN) |
| Rv3320c | Rv3320c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3335c | Rv3335c | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3417c | groEL1 | 60 KDA CHAPERONIN 1 GROEL1 (PROTEIN CPN60-1) (GROEL PROTEIN 1) |
| Rv3418c | groES | 10 KDA CHAPERONIN GROES (PROTEIN CPN10) (PROTEIN GROES) (BCG-A HEAT SHOCK PROTEIN) (10 KDA ANTIGEN) |
| Rv3568c | bphC | PROBABLE BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE BPHC (23OHBP OXYGENASE) (2,3-DIHYDROXYBIPHENYL DIOXYGENASE) (2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE) (DHBD) |
| Rv3913 | trxB2 | PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR) |
| Rv3915 | Rv3915 | PROBABLE HYDROLASE |
| Rv3917c | parB | PROBABLE CHROMOSOME PARTITIONING PROTEIN PARB |
| Rv3920c | Rv3920c | HYPOTHETICAL PROTEIN SIMILAR TO JAG PROTEIN |
| Rv3922c | Rv3922c | POSSIBLE HEMOLYSIN |
| Rv3923c | rnpA | RIBONUCLEASE P PROTEIN COMPONENT RNPA (RNaseP PROTEIN) (RNase P PROTEIN) (PROTEIN C5) |
| Rv3924c | rpmH | 50S RIBOSOMAL PROTEIN L34 RPMH |