| ORF | name | Annotation |
| Rv3363c | Rv3363c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1964 | yrbE3A | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE3A |
| Rv0366c | Rv0366c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3656c | Rv3656c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1662 | pks8 | Probable polyketide synthase pks8 |
| Rv3013 | Rv3013 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3741c | Rv3741c | POSSIBLE OXIDOREDUCTASE |
| Rv3632 | Rv3632 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0879c | Rv0879c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2122c | hisE | Probable phosphoribosyl-AMP pyrophosphatase HisE |
| Rv0832 | PE_PGRS12 | PE-PGRS FAMILY PROTEIN |
| Rv3354 | Rv3354 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2310 | Rv2310 | POSSIBLE EXCISIONASE |
| Rv3865 | Rv3865 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2887 | Rv2887 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2898c | Rv2898c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2423 | Rv2423 | HYPOTHETICAL PROTEIN |
| Rv2756c | hsdM | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM (M PROTEIN) (DNA METHYLTRANSFERASE) |
| Rv3834c | serS | SERYL-TRNA SYNTHETASE SERS (SERINE--TRNA LIGASE) (SERRS) (SERINE TRANSLASE) |
| Rv2283 | Rv2283 | HYPOTHETICAL PROTEIN |
| Rv2956 | Rv2956 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3757c | proW | POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER PROW |
| Rv0357c | purA | PROBABLE ADENYLOSUCCINATE SYNTHETASE PURA (IMP--ASPARTATE LIGASE) (ADSS) (AMPSASE) |
| Rv3745c | Rv3745c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2506 | Rv2506 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv3541c | Rv3541c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3424c | Rv3424c | HYPOTHETICAL PROTEIN |
| Rv3733c | Rv3733c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0698 | Rv0698 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0657c | Rv0657c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1039c | PPE15 | PPE FAMILY PROTEIN |
| Rv0630c | recB | PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC ENDONUCLEASE) |
| Rv2418c | Rv2418c | HYPOTHETICAL PROTEIN |
| Rv1590 | Rv1590 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1758 | cut1 | PROBABLE CUTINASE CUT1 |
| Rv1415 | ribA2 | PROBABLE RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA2 : GTP cyclohydrolase II + 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) |
| Rv2863 | Rv2863 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2038c | Rv2038c | Probable sugar-transport ATP-binding protein ABC transporter |
| Rv3311 | Rv3311 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3886c | mycP2 | PROBABLE ALANINE AND PROLINE RICH MEMBRANE-ANCHORED MYCOSIN MYCP2 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-2) |
| Rv1839c | Rv1839c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1515c | Rv1515c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0320 | Rv0320 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv1035c | Rv1035c | PROBABLE TRANSPOSASE (FRAGMENT) |
| Rv3071 | Rv3071 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2872 | Rv2872 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2400c | subI | PROBABLE SULFATE-BINDING LIPOPROTEIN SUBI |
| Rv0855 | far | PROBABLE FATTY-ACID-CoA RACEMASE FAR |
| Rv3769 | Rv3769 | HYPOTHETICAL PROTEIN |
| Rv0130 | Rv0130 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1761c | Rv1761c | HYPOTHETICAL EXPORTED PROTEIN |
| Rv3827c | Rv3827c | POSSIBLE TRANSPOSASE |
| Rv1076 | lipU | POSSIBLE LIPASE LIPU |
| Rv1351 | Rv1351 | HYPOTHETICAL PROTEIN |
| Rv3513c | fadD18 | PROBABLE FATTY-ACID-CoA LIGASE FADD18 (FRAGMENT) (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv2433c | Rv2433c | HYPOTHETICAL PROTEIN |
| Rv3812 | PE_PGRS62 | PE-PGRS FAMILY PROTEIN |
| Rv3751 | Rv3751 | PROBABLE INTEGRASE (FRAGMENT) |
| Rv2349c | plcC | PROBABLE PHOSPHOLIPASE C 3 PLCC |
| Rv1967 | mce3B | MCE-FAMILY PROTEIN MCE3B |
| Rv0977 | PE_PGRS16 | PE-PGRS FAMILY PROTEIN |
| Rv0526 | Rv0526 | POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) |
| Rv1610 | Rv1610 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv3639c | Rv3639c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2227 | Rv2227 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0893c | Rv0893c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1243c | PE_PGRS23 | PE-PGRS FAMILY PROTEIN |
| Rv3448 | Rv3448 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv0740 | Rv0740 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1969 | mce3D | MCE-FAMILY PROTEIN MCE3D |
| Rv1291c | Rv1291c | CONSERVED HYPOTHETICAL SECRETED PROTEIN |
| Rv0095c | Rv0095c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3766 | Rv3766 | HYPOTHETICAL PROTEIN |
| Rv1394c | cyp132 | PROBABLE CYTOCHROME P450 132 CYP132 |
| Rv1088 | PE9 | PE FAMILY PROTEIN |
| Rv2278 | Rv2278 | PROBABLE TRANSPOSASE |
| Rv3111 | moaC1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C MOAC1 |
| Rv3251c | rubA | PROBABLE RUBREDOXIN RUBA |
| Rv1755c | plcD | PROBABLE PHOSPHOLIPASE C 4 (FRAGMENT) PLCD |
| Rv2085 | Rv2085 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2598 | Rv2598 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3069 | Rv3069 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv1518 | Rv1518 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2947c | pks15 | PROBABLE POLYKETIDE SYNTHASE PKS15 |
| Rv1706c | PPE23 | PPE FAMILY PROTEIN |
| Rv2117 | Rv2117 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1414 | Rv1414 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1341 | Rv1341 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3384c | Rv3384c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0968 | Rv0968 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1125 | Rv1125 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2929 | Rv2929 | HYPOTHETICAL PROTEIN |
| Rv2820c | Rv2820c | HYPOTHETICAL PROTEIN |
| Rv2491 | Rv2491 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0028 | Rv0028 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0725c | Rv0725c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1603 | hisA | PROBABLE PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE HISA |
| Rv3068c | pgmA | PROBABLE PHOSPHOGLUCOMUTASE PGMA (GLUCOSE PHOSPHOMUTASE) (PGM) |
| Rv2755c | hsdS.1 | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM SPECIFICITY DETERMINANT (FRAGMENT) HSDS.1 (S PROTEIN) |
| Rv3106 | fprA | NADPH:ADRENODOXIN OXIDOREDUCTASE FPRA (NADPH-FERREDOXIN REDUCTASE) |
| Rv1575 | Rv1575 | Probable phiRV1 phage protein |
| Rv0408 | pta | PROBABLE PHOSPHATE ACETYLTRANSFERASE PTA (PHOSPHOTRANSACETYLASE) |
| Rv1788 | PE18 | PE FAMILY PROTEIN |
| Rv1089 | PE10 | PE FAMILY PROTEIN |
| Rv0807 | Rv0807 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2087 | Rv2087 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2637 | dedA | POSSIBLE TRANSMEMBRANE PROTEIN DEDA |
| Rv1693 | Rv1693 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1702c | Rv1702c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3821 | Rv3821 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3374 | echA18.1 | PROBABLE ENOYL-CoA HYDRATASE (FRAGMENT) ECHA18.1 (ENOYL HYDRASE) (UNSATURATED ACYL-CoA HYDRATASE) (CROTONASE) |
| Rv3021c | PPE47 | PPE FAMILY PROTEIN |
| Rv2000 | Rv2000 | HYPOTHETICAL PROTEIN |
| Rv2600 | Rv2600 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv2096c | Rv2096c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1562c | treZ | Maltooligosyltrehalose trehalohydrolase TreZ |
| Rv3862c | whiB6 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB6 |
| Rv2722 | Rv2722 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0039c | Rv0039c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0645c | mmaA1 | METHOXY MYCOLIC ACID SYNTHASE 1 MMAA1 (METHYL MYCOLIC ACID SYNTHASE 1) (MMA1) (HYDROXY MYCOLIC ACID SYNTHASE) |
| Rv2279 | Rv2279 | PROBABLE TRANSPOSASE |
| Rv3776 | Rv3776 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3000 | Rv3000 | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv1034c | Rv1034c | PROBABLE TRANSPOSASE (FRAGMENT) |
| Rv3396c | guaA | PROBABLE GMP SYNTHASE [GLUTAMINE-HYDROLYZING] GUAA (GLUTAMINE AMIDOTRANSFERASE) (GMP SYNTHETASE) |
| Rv2973c | recG | PROBABLE ATP-DEPENDENT DNA HELICASE RECG |
| Rv3113 | Rv3113 | POSSIBLE PHOSPHATASE |
| Rv2431c | PE25 | PE FAMILY PROTEIN |
| Rv2312 | Rv2312 | HYPOTHETICAL PROTEIN |
| Rv1381 | pyrC | PROBABLE DIHYDROOROTASE PYRC (DHOase) |
| Rv3815c | Rv3815c | POSSIBLE ACYLTRANSFERASE |
| Rv3850 | Rv3850 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3642c | Rv3642c | HYPOTHETICAL PROTEIN |
| Rv2528c | mrr | PROBABLE RESTRICTION SYSTEM PROTEIN MRR |
| Rv2013 | Rv2013 | POSSIBLE TRANSPOSASE |
| Rv2923c | Rv2923c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2745c | Rv2745c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1369c | Rv1369c | PROBABLE TRANSPOSASE |
| Rv2142c | Rv2142c | HYPOTHETICAL PROTEIN |
| Rv2209 | Rv2209 | Probable conserved integral membrane protein |
| Rv3246c | mtrA | TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY PROTEIN MTRA |
| Rv2258c | Rv2258c | Possible transcriptional regulatory protein |
| Rv0799c | Rv0799c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0531 | Rv0531 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv3725 | Rv3725 | POSSIBLE OXIDOREDUCTASE |
| Rv0007 | Rv0007 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv1717 | Rv1717 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0181c | Rv0181c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3329 | Rv3329 | PROBABLE AMINOTRANSFERASE |
| Rv1937 | Rv1937 | POSSIBLE OXYGENASE |
| Rv2938 | drrC | PROBABLE DAUNORUBICIN-DIM-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER DRRC |
| Rv2026c | Rv2026c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3856c | Rv3856c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1526c | Rv1526c | Probable glycosyltransferase |
| Rv1560 | Rv1560 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2407 | Rv2407 | CONSERVED HYPOTHETCAL PROTEIN |
| Rv2128 | Rv2128 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2011c | Rv2011c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0268c | Rv0268c | HYPOTHETICAL PROTEIN |
| Rv3684 | Rv3684 | PROBABLE LYASE |