| ORF | name | Annotation |
| Rv3355c | Rv3355c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3161c | Rv3161c | POSSIBLE DIOXYGENASE |
| Rv3181c | Rv3181c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1423 | whiA | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIA |
| Rv0119 | fadD7 | PROBABLE FATTY-ACID-CoA LIGASE FADD7 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3629c | Rv3629c | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3160c | Rv3160c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv0194 | Rv0194 | PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER |
| Rv3002c | ilvN | PROBABLE ACETOLACTATE SYNTHASE (SMALL SUBUNIT) ILVN (ACETOHYDROXY-ACID SYNTHASE) (AHAS) (ALS) |
| Rv3589 | mutY | PROBABLE ADENINE GLYCOSYLASE MUTY |
| Rv3631 | Rv3631 | POSSIBLE TRANSFERASE (POSSIBLY GLYCOSYLTRANSFERASE) |
| Rv3588c | Rv3588c | CARBONIC ANHYDRASE (CARBONATE DEHYDRATASE) (CARBONIC DEHYDRATASE) |
| Rv3546 | fadA5 | PROBABLE ACETYL-CoA ACETYLTRANSFERASE FADA5 (ACETOACETYL-CoA THIOLASE) |
| Rv0307c | Rv0307c | HYPOTHETICAL PROTEIN |
| Rv3226c | Rv3226c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0396 | Rv0396 | HYPOTHETICAL PROTEIN |
| Rv3366 | spoU | PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE) |
| Rv0135c | Rv0135c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv3177 | Rv3177 | POSSIBLE PEROXIDASE (NON-HAEM PEROXIDASE) |
| Rv3293 | pcd | PROBABLE PIPERIDEINE-6-CARBOXILIC ACID DEHYDROGENASE PCD (PIPERIDEINE-6-CARBOXYLATE DEHYDROGENASE) |
| Rv0030 | Rv0030 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1418 | lprH | PROBABLE LIPOPROTEIN LPRH |
| Rv3137 | Rv3137 | PROBABLE MONOPHOSPHATASE |
| Rv2354 | Rv2354 | PROBABLE TRANSPOSASE |
| Rv2769c | PE27 | PE FAMILY PROTEIN |
| Rv2667 | clpC2 | POSSIBLE ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPC2 |
| Rv0449c | Rv0449c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3174 | Rv3174 | PROBABLE SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Rv3388 | PE_PGRS52 | PE-PGRS FAMILY PROTEIN |
| Rv3533c | PPE62 | PPE FAMILY PROTEIN |
| Rv1886c | fbpB | SECRETED ANTIGEN 85-B FBPB (85B) (ANTIGEN 85 COMPLEX B) (MYCOLYL TRANSFERASE 85B) (FIBRONECTIN-BINDING PROTEIN B) (EXTRACELLULAR ALPHA-ANTIGEN) |
| Rv2254c | Rv2254c | Probable integral membrane protein |
| Rv2997 | Rv2997 | POSSIBLE ALANINE RICH DEHYDROGENASE |
| Rv3826 | fadD23 | PROBABLE FATTY-ACID-CoA LIGASE FADD23 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3378c | Rv3378c | HYPOTHETICAL PROTEIN |
| Rv0745 | Rv0745 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0705 | rpsS | PROBABLE 30S RIBOSOMAL PROTEIN S19 RPSS |
| Rv2807 | Rv2807 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3659c | Rv3659c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3201c | Rv3201c | PROBABLE ATP-DEPENDENT DNA HELICASE |
| Rv0344c | lpqJ | PROBABLE LIPOPROTEIN LPQJ |
| Rv3646c | topA | DNA TOPOISOMERASE I TOPA (OMEGA-PROTEIN) (RELAXING ENZYME) (UNTWISTING ENZYME) (SWIVELASE) (TYPE I DNA TOPOISOMERASE) (NICKING-CLOSING ENZYME) (TOPO I) |
| Rv0136 | cyp138 | PROBABLE CYTOCHROME P450 138 CYP138 |
| Rv2398c | cysW | PROBABLE SULFATE-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER CYSW |
| Rv3706c | Rv3706c | CONSERVED HYPOTHETICAL PROLINE RICH PROTEIN |
| Rv3159c | PPE53 | PPE FAMILY PROTEIN |
| Rv2873 | mpt83 | CELL SURFACE LIPOPROTEIN MPT83 (LIPOPROTEIN P23) |
| Rv2754c | thyX | PROBABLE THYMIDYLATE SYNTHASE THYX (TS) (TSase) |
| Rv1987 | Rv1987 | POSSIBLE CHITINASE |
| Rv0253 | nirD | PROBABLE NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT NIRD |
| Rv2141c | Rv2141c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2874 | dipZ | POSSIBLE INTEGRAL MEMBRANE C-TYPE CYTOCHROME BIOGENESIS PROTEIN DIPZ |