| ORF | name | Annotation |
| Rv0095c | Rv0095c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0171 | mce1C | MCE-FAMILY PROTEIN MCE1C |
| Rv0320 | Rv0320 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv0408 | pta | PROBABLE PHOSPHATE ACETYLTRANSFERASE PTA (PHOSPHOTRANSACETYLASE) |
| Rv0476 | Rv0476 | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0531 | Rv0531 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0544c | Rv0544c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0657c | Rv0657c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0721 | rpsE | PROBABLE 30S RIBOSOMAL PROTEIN S5 RPSE |
| Rv0740 | Rv0740 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0753c | mmsA | PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE MMSA (METHYLMALONIC ACID SEMIALDEHYDE DEHYDROGENASE) (MMSDH) |
| Rv0807 | Rv0807 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0832 | PE_PGRS12 | PE-PGRS FAMILY PROTEIN |
| Rv0882 | Rv0882 | PROBABLE TRANSMEMBRANE PROTEIN |
| Rv0921 | Rv0921 | POSSIBLE RESOLVASE |
| Rv0977 | PE_PGRS16 | PE-PGRS FAMILY PROTEIN |
| Rv1039c | PPE15 | PPE FAMILY PROTEIN |
| Rv1076 | lipU | POSSIBLE LIPASE LIPU |
| Rv1136 | Rv1136 | POSSIBLE ENOYL-CoA HYDRATASE |
| Rv1209 | Rv1209 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1341 | Rv1341 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1351 | Rv1351 | HYPOTHETICAL PROTEIN |
| Rv1386 | PE15 | PE FAMILY PROTEIN |
| Rv1415 | ribA2 | PROBABLE RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA2 : GTP cyclohydrolase II + 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) |
| Rv1427c | fadD12 | POSSIBLE LONG-CHAIN-FATTY-ACID--CoA LIGASE FADD12 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-COA SYNTHASE) |
| Rv1443c | Rv1443c | HYPOTHETICAL PROTEIN |
| Rv1515c | Rv1515c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1520 | Rv1520 | probable sugar transferase |
| Rv1538c | ansA | Probable L-aparaginase ansA |
| Rv1545 | Rv1545 | HYPOTHETICAL PROTEIN |
| Rv1560 | Rv1560 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1575 | Rv1575 | Probable phiRV1 phage protein |
| Rv1590 | Rv1590 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1651c | PE_PGRS30 | PE-PGRS FAMILY PROTEIN |
| Rv1662 | pks8 | Probable polyketide synthase pks8 |
| Rv1702c | Rv1702c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1706c | PPE23 | PPE FAMILY PROTEIN |
| Rv1758 | cut1 | PROBABLE CUTINASE CUT1 |
| Rv1767 | Rv1767 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1804c | Rv1804c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1822 | pgsA2 | PROBABLECDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE PGSA2 (PGP SYNTHASE) (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE) (3-PHOSPHATIDYL-1'-GLYCEROL-3'PHOSPHATE SYNTHASE) |
| Rv1838c | Rv1838c | CONSERVED HYPOTHETICAL |
| Rv1839c | Rv1839c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1845c | Rv1845c | CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN |
| Rv1871c | Rv1871c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1896c | Rv1896c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1937 | Rv1937 | POSSIBLE OXYGENASE |
| Rv1964 | yrbE3A | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE3A |
| Rv1967 | mce3B | MCE-FAMILY PROTEIN MCE3B |
| Rv1969 | mce3D | MCE-FAMILY PROTEIN MCE3D |
| Rv2000 | Rv2000 | HYPOTHETICAL PROTEIN |
| Rv2038c | Rv2038c | Probable sugar-transport ATP-binding protein ABC transporter |
| Rv2049c | Rv2049c | HYPOTHETICAL PROTEIN |
| Rv2087 | Rv2087 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2096c | Rv2096c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2117 | Rv2117 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2128 | Rv2128 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2160c | Rv2160c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2209 | Rv2209 | Probable conserved integral membrane protein |
| Rv2232 | Rv2232 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2278 | Rv2278 | PROBABLE TRANSPOSASE |
| Rv2310 | Rv2310 | POSSIBLE EXCISIONASE |
| Rv2312 | Rv2312 | HYPOTHETICAL PROTEIN |
| Rv2349c | plcC | PROBABLE PHOSPHOLIPASE C 3 PLCC |
| Rv2418c | Rv2418c | HYPOTHETICAL PROTEIN |
| Rv2422 | Rv2422 | HYPOTHETICAL PROTEIN |
| Rv2423 | Rv2423 | HYPOTHETICAL PROTEIN |
| Rv2431c | PE25 | PE FAMILY PROTEIN |
| Rv2433c | Rv2433c | HYPOTHETICAL PROTEIN |
| Rv2451 | Rv2451 | HYPOTHETICAL PROLINE AND SERINE RICH PROTEIN |
| Rv2452c | Rv2452c | HYPOTHETICAL PROTEIN |
| Rv2491 | Rv2491 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2506 | Rv2506 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv2534c | efp | PROBABLE ELONGATION FACTOR P EFP |
| Rv2600 | Rv2600 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv2656c | Rv2656c | POSSIBLE phiRv2 PROPHAGE PROTEIN |
| Rv2694c | Rv2694c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2722 | Rv2722 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2758c | Rv2758c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2872 | Rv2872 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2910c | Rv2910c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2956 | Rv2956 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3013 | Rv3013 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3015c | Rv3015c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3069 | Rv3069 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3071 | Rv3071 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3111 | moaC1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C MOAC1 |
| Rv3175 | Rv3175 | POSSIBLE AMIDASE (AMINOHYDROLASE) |
| Rv3251c | rubA | PROBABLE RUBREDOXIN RUBA |
| Rv3311 | Rv3311 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3345c | PE_PGRS50 | PE-PGRS FAMILY PROTEIN |
| Rv3354 | Rv3354 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3387 | Rv3387 | POSSIBLE TRANSPOSASE |
| Rv3424c | Rv3424c | HYPOTHETICAL PROTEIN |
| Rv3489 | Rv3489 | HYPOTHETICAL PROTEIN |
| Rv3513c | fadD18 | PROBABLE FATTY-ACID-CoA LIGASE FADD18 (FRAGMENT) (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3522 | ltp4 | POSSIBLE LIPID TRANSFER PROTEIN OR KETO ACYL-COA THIOLASE LTP4 |
| Rv3541c | Rv3541c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3549c | Rv3549c | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE |
| Rv3560c | fadE30 | PROBABLE ACYL-CoA DEHYDROGENASE FADE30 |
| Rv3599c | Rv3599c | HYPOTHETICAL SHORT PROTEIN |
| Rv3632 | Rv3632 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv3639c | Rv3639c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3656c | Rv3656c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3684 | Rv3684 | PROBABLE LYASE |
| Rv3725 | Rv3725 | POSSIBLE OXIDOREDUCTASE |
| Rv3741c | Rv3741c | POSSIBLE OXIDOREDUCTASE |
| Rv3751 | Rv3751 | PROBABLE INTEGRASE (FRAGMENT) |
| Rv3757c | proW | POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER PROW |
| Rv3769 | Rv3769 | HYPOTHETICAL PROTEIN |
| Rv3815c | Rv3815c | POSSIBLE ACYLTRANSFERASE |
| Rv3821 | Rv3821 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3834c | serS | SERYL-TRNA SYNTHETASE SERS (SERINE--TRNA LIGASE) (SERRS) (SERINE TRANSLASE) |
| Rv3861 | Rv3861 | HYPOTHETICAL PROTEIN |
| Rv3865 | Rv3865 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3886c | mycP2 | PROBABLE ALANINE AND PROLINE RICH MEMBRANE-ANCHORED MYCOSIN MYCP2 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-2) |