| ORF | name | Annotation |
| Rv0032 | bioF2 | POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) |
| Rv0053 | rpsF | PROBABLE 30S RIBOSOMAL PROTEIN S6 RPSF |
| Rv0066c | icd2 | PROBABLE ISOCITRATE DEHYDROGENASE [NADP] ICD2 (OXALOSUCCINATE DECARBOXYLASE) (IDH) (NADP+-SPECIFIC ICDH) (IDP) |
| Rv0067c | Rv0067c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) |
| Rv0073 | Rv0073 | PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER |
| Rv0076c | Rv0076c | PROBABLE MEMBRANE PROTEIN |
| Rv0077c | Rv0077c | PROBABLE OXIDOREDUCTASE |
| Rv0111 | Rv0111 | POSSIBLE TRANSMEMBRANE ACYLTRANSFERASE |
| Rv0119 | fadD7 | PROBABLE FATTY-ACID-CoA LIGASE FADD7 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv0121c | Rv0121c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0156 | pntAb | PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAB [SECOND PART; INTEGRAL MEMBRANE PROTEIN] (PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA) (NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA) |
| Rv0164 | TB18.5 | CONSERVED HYPOTHETICAL PROTEIN TB18.5 |
| Rv0237 | lpqI | PROBABLE CONSERVED LIPOPROTEIN LPQI |
| Rv0449c | Rv0449c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0453 | PPE11 | PPE FAMILY PROTEIN |
| Rv0463 | Rv0463 | PROBABLE CONSERVED MEMBRANE PROTEIN |
| Rv0575c | Rv0575c | POSSIBLE OXIDOREDUCTASE |
| Rv0601c | Rv0601c | PROBABLE TWO COMPONENT SENSOR KINASE [FIRST PART] |
| Rv0705 | rpsS | PROBABLE 30S RIBOSOMAL PROTEIN S19 RPSS |
| Rv0711 | atsA | POSSIBLE ARYLSULFATASE ATSA (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) |
| Rv0739 | Rv0739 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0745 | Rv0745 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0828c | Rv0828c | POSSIBLE DEAMINASE |
| Rv0918 | Rv0918 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0938 | Rv0938 | POSSIBLE ATP DEPENDENT DNA LIGASE (ATP DEPENDENT POLYDEOXYRIBONUCLEOTIDE SYNTHASE) (THERMOSTABLE DNA LIGASE) (ATP DEPENDENT POLYNUCLEOTIDE LIGASE) (SEALASE) (DNA REPAIR ENZYME) (DNA JOINASE) |
| Rv0944 | Rv0944 | POSSIBLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNA GLYCOSYLASE) |
| Rv1068c | PE_PGRS20 | PE-PGRS FAMILY PROTEIN |
| Rv1529 | fadD24 | PROBABLE FATTY-ACID-CoA LIGASE FADD24 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv1563c | treY | Maltooligosyltrehalose synthase TreY |
| Rv1629 | polA | PROBABLE DNA POLYMERASE I POLA |
| Rv1650 | pheT | Probable phenylalanyl-tRNA synthetase, beta chain PheT |
| Rv1670 | Rv1670 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1675c | Rv1675c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1683 | Rv1683 | Possible long-chain acyl-CoA synthase |
| Rv1693 | Rv1693 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1807 | PPE31 | PPE FAMILY PROTEIN |
| Rv1876 | bfrA | PROBABLE BACTERIOFERRITIN BFRA |
| Rv1959c | Rv1959c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1966 | mce3A | MCE-FAMILY PROTEIN MCE3A |
| Rv1971 | mce3F | MCE-FAMILY PROTEIN MCE3F |
| Rv1987 | Rv1987 | POSSIBLE CHITINASE |
| Rv2123 | PPE37 | PPE FAMILY PROTEIN |
| Rv2179c | Rv2179c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2234 | ptpA | PHOSPHOTYROSINE PROTEIN PHOSPHATASE PTPA (PROTEIN-TYROSINE-PHOSPHATASE) (PTPase) (LMW PHOSPHATASE) |
| Rv2253 | Rv2253 | Possible secreted unknown protein |
| Rv2354 | Rv2354 | PROBABLE TRANSPOSASE |
| Rv2428 | ahpC | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) |
| Rv2511 | orn | OLIGORIBONUCLEASE ORN |
| Rv2558 | Rv2558 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2642 | Rv2642 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) |
| Rv2644c | Rv2644c | HYPOTHETICAL PROTEIN |
| Rv2809 | Rv2809 | HYPOTHETICAL PROTEIN |
| Rv2815c | Rv2815c | PROBABLE TRANSPOSASE |
| Rv2836c | dinF | POSSIBLE DNA-DAMAGE-INDUCIBLE PROTEIN F DINF |
| Rv2857c | Rv2857c | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE |
| Rv2873 | mpt83 | CELL SURFACE LIPOPROTEIN MPT83 (LIPOPROTEIN P23) |
| Rv2877c | Rv2877c | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv2914c | pknI | PROBABLE TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE I PKNI (PROTEIN KINASE I) (STPK I) (PHOSPHORYLASE B KINASE KINASE) (HYDROXYALKYL-PROTEIN KINASE) |
| Rv2926c | Rv2926c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3109 | moaA1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A MOAA1 |
| Rv3151 | nuoG | PROBABLE NADH DEHYDROGENASE I (CHAIN G) NUOG (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN G) |
| Rv3159c | PPE53 | PPE FAMILY PROTEIN |
| Rv3160c | Rv3160c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv3161c | Rv3161c | POSSIBLE DIOXYGENASE |
| Rv3180c | Rv3180c | HYPOTHETICAL ALANINE RICH PROTEIN |
| Rv3196 | Rv3196 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3202c | Rv3202c | POSSIBLE ATP-DEPENDENT DNA HELICASE |
| Rv3239c | Rv3239c | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN |
| Rv3266c | rmlD | dTDP-6-DEOXY-L-LYXO-4-HEXULOSE REDUCTASE RMLD (dTDP-RHAMNOSE MODIFICATION PROTEIN) (dTDP-RHAMNOSE BIOSYNTHESIS PROTEIN) (dTDP-RHAMNOSE SYNTHASE) |
| Rv3381c | Rv3381c | PROBABLE TRANSPOSASE |
| Rv3444c | esxT | PUTATIVE ESAT-6 LIKE PROTEIN ESXT |
| Rv3507 | PE_PGRS53 | PE-PGRS FAMILY PROTEIN |
| Rv3508 | PE_PGRS54 | PE-PGRS FAMILY PROTEIN |
| Rv3557c | Rv3557c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv3622c | PE32 | PE FAMILY PROTEIN |
| Rv3689 | Rv3689 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3771c | Rv3771c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3824c | papA1 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA1 |
| Rv3853 | menG | PROBABLES-ADENOSYLMETHIONINE:2-DEMETHYLMENAQUINONE METHYLTRANSFERASE MENG |
| Rv3905c | esxF | PUTATIVE ESAT-6 LIKE PROTEIN ESXF (HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 13) |