| ORF | name | Annotation |
| Rv0007 | Rv0007 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0033 | acpA | PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) |
| Rv0039c | Rv0039c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0067c | Rv0067c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) |
| Rv0073 | Rv0073 | PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER |
| Rv0171 | mce1C | MCE-FAMILY PROTEIN MCE1C |
| Rv0181c | Rv0181c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0215c | fadE3 | PROBABLE ACYL-CoA DEHYDROGENASE FADE3 |
| Rv0298 | Rv0298 | HYPOTHETICAL PROTEIN |
| Rv0324 | Rv0324 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR-FAMILY) |
| Rv0366c | Rv0366c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0372c | Rv0372c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0435c | Rv0435c | PUTATIVE CONSERVED ATPASE |
| Rv0514 | Rv0514 | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv0531 | Rv0531 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0578c | PE_PGRS7 | PE-PGRS FAMILY PROTEIN |
| Rv0581 | Rv0581 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0613c | Rv0613c | HYPOTHETICAL PROTEIN |
| Rv0618 | galTa | PROBABLE GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALTA [FIRST PART] |
| Rv0626 | Rv0626 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0630c | recB | PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC ENDONUCLEASE) |
| Rv0665 | Rv0665 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0698 | Rv0698 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0730 | Rv0730 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0740 | Rv0740 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0807 | Rv0807 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0832 | PE_PGRS12 | PE-PGRS FAMILY PROTEIN |
| Rv0833 | PE_PGRS13 | PE-PGRS FAMILY PROTEIN |
| Rv0855 | far | PROBABLE FATTY-ACID-CoA RACEMASE FAR |
| Rv0879c | Rv0879c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0882 | Rv0882 | PROBABLE TRANSMEMBRANE PROTEIN |
| Rv0893c | Rv0893c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0921 | Rv0921 | POSSIBLE RESOLVASE |
| Rv0968 | Rv0968 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0977 | PE_PGRS16 | PE-PGRS FAMILY PROTEIN |
| Rv1004c | Rv1004c | PROBABLE MEMBRANE PROTEIN |
| Rv1034c | Rv1034c | PROBABLE TRANSPOSASE (FRAGMENT) |
| Rv1035c | Rv1035c | PROBABLE TRANSPOSASE (FRAGMENT) |
| Rv1039c | PPE15 | PPE FAMILY PROTEIN |
| Rv1067c | PE_PGRS19 | PE-PGRS FAMILY PROTEIN |
| Rv1068c | PE_PGRS20 | PE-PGRS FAMILY PROTEIN |
| Rv1076 | lipU | POSSIBLE LIPASE LIPU |
| Rv1087 | PE_PGRS21 | PE-PGRS FAMILY PROTEIN |
| Rv1088 | PE9 | PE FAMILY PROTEIN |
| Rv1089 | PE10 | PE FAMILY PROTEIN |
| Rv1128c | Rv1128c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1136 | Rv1136 | POSSIBLE ENOYL-CoA HYDRATASE |
| Rv1142c | echA10 | PROBABLE ENOYL-CoA HYDRATASE ECHA10 (ENOYL HYDRASE) (UNSATURATED ACYL-CoA HYDRATASE) (CROTONASE) |
| Rv1143 | mcr | PROBABLE ALPHA-METHYLACYL-CoA RACEMASE MCR (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase ) |
| Rv1239c | corA | POSSIBLE MAGNESIUM AND COBALT TRANSPORT TRANSMEMBRANE PROTEIN CORA |
| Rv1291c | Rv1291c | CONSERVED HYPOTHETICAL SECRETED PROTEIN |
| Rv1341 | Rv1341 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1345 | fadD33 | POSSIBLE POLYKETIDE SYNTHASE FADD33 |
| Rv1351 | Rv1351 | HYPOTHETICAL PROTEIN |
| Rv1420 | uvrC | PROBABLE EXCINUCLEASE ABC (SUBUNIT C - NUCLEASE) UVRC |
| Rv1443c | Rv1443c | HYPOTHETICAL PROTEIN |
| Rv1460 | Rv1460 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1477 | Rv1477 | HYPOTHETICAL INVASION PROTEIN |
| Rv1478 | Rv1478 | HYPOTHETICAL INVASION PROTEIN |
| Rv1515c | Rv1515c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1518 | Rv1518 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1520 | Rv1520 | probable sugar transferase |
| Rv1523 | Rv1523 | Probable methyltransferase |
| Rv1526c | Rv1526c | Probable glycosyltransferase |
| Rv1554 | frdC | PROBABLE FUMARATE REDUCTASE [MEMBRANE ANCHOR SUBUNIT] FRDC (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) |
| Rv1560 | Rv1560 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1575 | Rv1575 | Probable phiRV1 phage protein |
| Rv1603 | hisA | PROBABLE PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE HISA |
| Rv1605 | hisF | Probable cyclase hisF |
| Rv1610 | Rv1610 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv1651c | PE_PGRS30 | PE-PGRS FAMILY PROTEIN |
| Rv1662 | pks8 | Probable polyketide synthase pks8 |
| Rv1667c | Rv1667c | PROBABLE SECOND PART OF MACROLIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER |
| Rv1673c | Rv1673c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1700 | Rv1700 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1702c | Rv1702c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1705c | PPE22 | PPE FAMILY PROTEIN |
| Rv1706c | PPE23 | PPE FAMILY PROTEIN |
| Rv1758 | cut1 | PROBABLE CUTINASE CUT1 |
| Rv1761c | Rv1761c | HYPOTHETICAL EXPORTED PROTEIN |
| Rv1765c | Rv1765c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1767 | Rv1767 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1768 | PE_PGRS31 | PE-PGRS FAMILY PROTEIN |
| Rv1787 | PPE25 | PPE FAMILY PROTEIN |
| Rv1788 | PE18 | PE FAMILY PROTEIN |
| Rv1804c | Rv1804c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1839c | Rv1839c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1939 | Rv1939 | PROBABLE OXIDOREDUCTASE |
| Rv1963c | mce3R | PROBABLE TRANSCRIPTIONAL REPRESSOR (PROBABLY TETR-FAMILY) MCE3R |
| Rv1964 | yrbE3A | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE3A |
| Rv1967 | mce3B | MCE-FAMILY PROTEIN MCE3B |
| Rv1969 | mce3D | MCE-FAMILY PROTEIN MCE3D |
| Rv1970 | lprM | POSSIBLE MCE-FAMILY LIPOPROTEIN LPRM (MCE-FAMILY LIPOPROTEIN MCE3E) |
| Rv2013 | Rv2013 | POSSIBLE TRANSPOSASE |
| Rv2038c | Rv2038c | Probable sugar-transport ATP-binding protein ABC transporter |
| Rv2049c | Rv2049c | HYPOTHETICAL PROTEIN |
| Rv2085 | Rv2085 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2087 | Rv2087 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2117 | Rv2117 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2160c | Rv2160c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2161c | Rv2161c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2197c | Rv2197c | Probable conserved transmembrane protein |
| Rv2227 | Rv2227 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2232 | Rv2232 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2273 | Rv2273 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2278 | Rv2278 | PROBABLE TRANSPOSASE |
| Rv2283 | Rv2283 | HYPOTHETICAL PROTEIN |
| Rv2310 | Rv2310 | POSSIBLE EXCISIONASE |
| Rv2312 | Rv2312 | HYPOTHETICAL PROTEIN |
| Rv2342 | Rv2342 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2349c | plcC | PROBABLE PHOSPHOLIPASE C 3 PLCC |
| Rv2412 | rpsT | PROBABLE 30S RIBOSOMAL PROTEIN S20 RPST |
| Rv2418c | Rv2418c | HYPOTHETICAL PROTEIN |
| Rv2422 | Rv2422 | HYPOTHETICAL PROTEIN |
| Rv2423 | Rv2423 | HYPOTHETICAL PROTEIN |
| Rv2433c | Rv2433c | HYPOTHETICAL PROTEIN |
| Rv2451 | Rv2451 | HYPOTHETICAL PROLINE AND SERINE RICH PROTEIN |
| Rv2490c | PE_PGRS43 | PE-PGRS FAMILY PROTEIN |
| Rv2506 | Rv2506 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv2523c | acpS | HOLO-[ACYL-CARRIER PROTEIN] SYNTHASE ACPS (HOLO-ACP SYNTHASE) (CoA:APO-[ACP]PANTETHEINEPHOSPHOTRANSFERASE) (CoA:APO-[ACYL-CARRIER PROTEIN]PANTETHEINEPHOSPHOTRANSFERASE) |
| Rv2534c | efp | PROBABLE ELONGATION FACTOR P EFP |
| Rv2564 | glnQ | PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER GLNQ |
| Rv2598 | Rv2598 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2600 | Rv2600 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv2635 | Rv2635 | HYPOTHETICAL PROTEIN |
| Rv2653c | Rv2653c | POSSIBLE phiRv2 PROPHAGE PROTEIN |
| Rv2656c | Rv2656c | POSSIBLE phiRv2 PROPHAGE PROTEIN |
| Rv2722 | Rv2722 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2741 | PE_PGRS47 | PE-PGRS FAMILY PROTEIN |
| Rv2756c | hsdM | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM (M PROTEIN) (DNA METHYLTRANSFERASE) |
| Rv2758c | Rv2758c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2863 | Rv2863 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2887 | Rv2887 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2891 | Rv2891 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2898c | Rv2898c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2923c | Rv2923c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2947c | pks15 | PROBABLE POLYKETIDE SYNTHASE PKS15 |
| Rv2975c | Rv2975c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2986c | hupB | PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN) |
| Rv3000 | Rv3000 | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3017c | esxQ | ESAT-6 LIKE PROTEIN ESXQ (TB12.9) (ESAT-6 LIKE PROTEIN 8) |
| Rv3021c | PPE47 | PPE FAMILY PROTEIN |
| Rv3039c | echA17 | PROBABLE ENOYL-CoA HYDRATASE ECHA17 (CROTONASE) (UNSATURED ACYL-CoA HYDRATASE) (ENOYL HYDRASE) |
| Rv3055 | Rv3055 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv3070 | Rv3070 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3175 | Rv3175 | POSSIBLE AMIDASE (AMINOHYDROLASE) |
| Rv3179 | Rv3179 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3183 | Rv3183 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv3300c | Rv3300c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3305c | amiA1 | POSSIBLE N-ACYL-L-AMINO ACID AMIDOHYDROLASE AMIA1 (N-ACYL-L-AMINO ACID AMINOHYDROLASE) |
| Rv3311 | Rv3311 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3345c | PE_PGRS50 | PE-PGRS FAMILY PROTEIN |
| Rv3354 | Rv3354 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3357 | Rv3357 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3364c | Rv3364c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3365c | Rv3365c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3384c | Rv3384c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3385c | Rv3385c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3386 | Rv3386 | POSSIBLE TRANSPOSASE |
| Rv3387 | Rv3387 | POSSIBLE TRANSPOSASE |
| Rv3445c | esxU | ESAT-6 LIKE PROTEIN ESXU |
| Rv3448 | Rv3448 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3473c | bpoA | POSSIBLE PEROXIDASE BPOA (NON-HAEM PEROXIDASE) |
| Rv3507 | PE_PGRS53 | PE-PGRS FAMILY PROTEIN |
| Rv3513c | fadD18 | PROBABLE FATTY-ACID-CoA LIGASE FADD18 (FRAGMENT) (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3522 | ltp4 | POSSIBLE LIPID TRANSFER PROTEIN OR KETO ACYL-COA THIOLASE LTP4 |
| Rv3532 | PPE61 | PPE FAMILY PROTEIN |
| Rv3541c | Rv3541c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3543c | fadE29 | PROBABLE ACYL-CoA DEHYDROGENASE FADE29 |
| Rv3549c | Rv3549c | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE |
| Rv3560c | fadE30 | PROBABLE ACYL-CoA DEHYDROGENASE FADE30 |
| Rv3580c | cysS1 | CYSTEINYL-TRNA SYNTHETASE 1 CYSS1 (CYSTEINE--TRNA LIGASE 1) (CYSRS 1) (CYSTEINE TRANSLASE) |
| Rv3599c | Rv3599c | HYPOTHETICAL SHORT PROTEIN |
| Rv3632 | Rv3632 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv3639c | Rv3639c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3653 | PE_PGRS61 | PE-PGRS FAMILY-RELATED PROTEIN |
| Rv3656c | Rv3656c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3657c | Rv3657c | POSSIBLE CONSERVED ALANINE RICH MEMBRANE PROTEIN |
| Rv3712 | Rv3712 | POSSIBLE LIGASE |
| Rv3747 | Rv3747 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3748 | Rv3748 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3751 | Rv3751 | PROBABLE INTEGRASE (FRAGMENT) |
| Rv3757c | proW | POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER PROW |
| Rv3769 | Rv3769 | HYPOTHETICAL PROTEIN |
| Rv3786c | Rv3786c | HYPOTHETICAL PROTEIN |
| Rv3812 | PE_PGRS62 | PE-PGRS FAMILY PROTEIN |
| Rv3815c | Rv3815c | POSSIBLE ACYLTRANSFERASE |
| Rv3816c | Rv3816c | POSSIBLE ACYLTRANSFERASE |
| Rv3821 | Rv3821 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3834c | serS | SERYL-TRNA SYNTHETASE SERS (SERINE--TRNA LIGASE) (SERRS) (SERINE TRANSLASE) |
| Rv3850 | Rv3850 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3861 | Rv3861 | HYPOTHETICAL PROTEIN |
| Rv3865 | Rv3865 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3886c | mycP2 | PROBABLE ALANINE AND PROLINE RICH MEMBRANE-ANCHORED MYCOSIN MYCP2 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-2) |
| Rv3904c | esxE | PUTATIVE ESAT-6 LIKE PROTEIN ESXE (HYPOTHETICAL ALANINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 12) |
| Rv3911 | sigM | POSSIBLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGM |