| ORF | name | Annotation |
| Rv0053 | rpsF | PROBABLE 30S RIBOSOMAL PROTEIN S6 RPSF |
| Rv0112 | gca | POSSIBLE GDP-MANNOSE 4,6-DEHYDRATASE GCA (GDP-D-MANNOSE DEHYDRATASE) |
| Rv0281 | Rv0281 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0404 | fadD30 | PROBABLE FATTY-ACID-CoA LIGASE FADD30 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv0446c | Rv0446c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0447c | ufaA1 | PROBABLE CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE UFAA1 (CYCLOPROPANE FATTY ACID SYNTHASE) (CFA SYNTHASE) |
| Rv0448c | Rv0448c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0449c | Rv0449c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0454 | Rv0454 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0536 | galE3 | PROBABLE UDP-GLUCOSE 4-EPIMERASE GALE3 (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHATE GALACTOSE 4-EPIMERASE) (URIDINE DIPHOSPHO-GALACTOSE 4-EPIMERASE) |
| Rv0711 | atsA | POSSIBLE ARYLSULFATASE ATSA (ARYL-SULFATE SULPHOHYDROLASE) (ARYLSULPHATASE) |
| Rv0828c | Rv0828c | POSSIBLE DEAMINASE |
| Rv0874c | Rv0874c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0878c | PPE13 | PPE FAMILY PROTEIN |
| Rv0988 | Rv0988 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv1102c | Rv1102c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1154c | Rv1154c | HYPOTHETICAL PROTEIN |
| Rv1169c | PE11 | PE FAMILY PROTEIN |
| Rv1251c | Rv1251c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1495 | Rv1495 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1529 | fadD24 | PROBABLE FATTY-ACID-CoA LIGASE FADD24 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv1660 | pks10 | Possible chalcone synthase pks10 |
| Rv1675c | Rv1675c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1799 | lppT | PROBABLE LIPOPROTEIN LPPT |
| Rv1876 | bfrA | PROBABLE BACTERIOFERRITIN BFRA |
| Rv1910c | Rv1910c | PROBABLE EXPORTED PROTEIN |
| Rv1980c | mpt64 | IMMUNOGENIC PROTEIN MPT64 (ANTIGEN MPT64/MPB64) |
| Rv1981c | nrdF1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) |
| Rv1987 | Rv1987 | POSSIBLE CHITINASE |
| Rv1993c | Rv1993c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2016 | Rv2016 | HYPOTHETICAL PROTEIN |
| Rv2108 | PPE36 | PPE FAMILY PROTEIN |
| Rv2329c | narK1 | PROBABLE NITRITE EXTRUSION PROTEIN 1 NARK1 (NITRITE FACILITATOR 1) |
| Rv2354 | Rv2354 | PROBABLE TRANSPOSASE |
| Rv2428 | ahpC | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) |
| Rv2493 | Rv2493 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2736c | recX | REGULATORY PROTEIN RECX |
| Rv2763c | dfrA | DIHYDROFOLATE REDUCTASE DFRA (DHFR) (TETRAHYDROFOLATE DEHYDROGENASE) |
| Rv2815c | Rv2815c | PROBABLE TRANSPOSASE |
| Rv2816c | Rv2816c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2818c | Rv2818c | HYPOTHETICAL PROTEIN |
| Rv2873 | mpt83 | CELL SURFACE LIPOPROTEIN MPT83 (LIPOPROTEIN P23) |
| Rv2874 | dipZ | POSSIBLE INTEGRAL MEMBRANE C-TYPE CYTOCHROME BIOGENESIS PROTEIN DIPZ |
| Rv2877c | Rv2877c | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv2928 | tesA | PROBABLE THIOESTERASE TESA |
| Rv2974c | Rv2974c | CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN |
| Rv3109 | moaA1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A MOAA1 |
| Rv3153 | nuoI | PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN I) |
| Rv3207c | Rv3207c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3216 | Rv3216 | POSSIBLE ACETYLTRANSFERASE |
| Rv3339c | icd1 | PROBABLE ISOCITRATE DEHYDROGENASE [NADP] ICD1 (OXALOSUCCINATE DECARBOXYLASE) (IDH) (NADP+-SPECIFIC ICDH) (IDP) |
| Rv3350c | PPE56 | PPE FAMILY PROTEIN |
| Rv3377c | Rv3377c | POSSIBLE CYCLASE |
| Rv3378c | Rv3378c | HYPOTHETICAL PROTEIN |
| Rv3462c | infA | PROBABLE TRANSLATION INITIATION FACTOR IF-1 INFA |
| Rv3508 | PE_PGRS54 | PE-PGRS FAMILY PROTEIN |
| Rv3750c | Rv3750c | POSSIBLE EXCISIONASE |
| Rv3771c | Rv3771c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3826 | fadD23 | PROBABLE FATTY-ACID-CoA LIGASE FADD23 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3827c | Rv3827c | POSSIBLE TRANSPOSASE |
| Rv3853 | menG | PROBABLES-ADENOSYLMETHIONINE:2-DEMETHYLMENAQUINONE METHYLTRANSFERASE MENG |
| Rv3905c | esxF | PUTATIVE ESAT-6 LIKE PROTEIN ESXF (HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 13) |