| ORF | name | Annotation |
| Rv0007 | Rv0007 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0033 | acpA | PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) |
| Rv0067c | Rv0067c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) |
| Rv0100 | Rv0100 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0152c | PE2 | PE FAMILY PROTEIN |
| Rv0171 | mce1C | MCE-FAMILY PROTEIN MCE1C |
| Rv0298 | Rv0298 | HYPOTHETICAL PROTEIN |
| Rv0320 | Rv0320 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv0357c | purA | PROBABLE ADENYLOSUCCINATE SYNTHETASE PURA (IMP--ASPARTATE LIGASE) (ADSS) (AMPSASE) |
| Rv0366c | Rv0366c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0430 | Rv0430 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0435c | Rv0435c | PUTATIVE CONSERVED ATPASE |
| Rv0514 | Rv0514 | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv0526 | Rv0526 | POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) |
| Rv0531 | Rv0531 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0578c | PE_PGRS7 | PE-PGRS FAMILY PROTEIN |
| Rv0615 | Rv0615 | PROBABLE INTEGRAL MEMBRANE PROTEIN |
| Rv0625c | Rv0625c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0626 | Rv0626 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0657c | Rv0657c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0698 | Rv0698 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0725c | Rv0725c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0740 | Rv0740 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0743c | Rv0743c | HYPOTHETICAL PROTEIN |
| Rv0748 | Rv0748 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0807 | Rv0807 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0832 | PE_PGRS12 | PE-PGRS FAMILY PROTEIN |
| Rv0855 | far | PROBABLE FATTY-ACID-CoA RACEMASE FAR |
| Rv0872c | PE_PGRS15 | PE-PGRS FAMILY PROTEIN |
| Rv0879c | Rv0879c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0882 | Rv0882 | PROBABLE TRANSMEMBRANE PROTEIN |
| Rv0893c | Rv0893c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0907 | Rv0907 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0909 | Rv0909 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0921 | Rv0921 | POSSIBLE RESOLVASE |
| Rv0931c | pknD | TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE D PKND (PROTEIN KINASE D) (STPK D) |
| Rv0968 | Rv0968 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0977 | PE_PGRS16 | PE-PGRS FAMILY PROTEIN |
| Rv1034c | Rv1034c | PROBABLE TRANSPOSASE (FRAGMENT) |
| Rv1035c | Rv1035c | PROBABLE TRANSPOSASE (FRAGMENT) |
| Rv1039c | PPE15 | PPE FAMILY PROTEIN |
| Rv1052 | Rv1052 | HYPOTHETICAL PROTEIN |
| Rv1076 | lipU | POSSIBLE LIPASE LIPU |
| Rv1087 | PE_PGRS21 | PE-PGRS FAMILY PROTEIN |
| Rv1089 | PE10 | PE FAMILY PROTEIN |
| Rv1128c | Rv1128c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1136 | Rv1136 | POSSIBLE ENOYL-CoA HYDRATASE |
| Rv1139c | Rv1139c | CONSERVED HYPOTHETICAL MEMBRANE PROTEIN |
| Rv1141c | echA11 | PROBABLE ENOYL-CoA HYDRATASE ECHA11 (ENOYL HYDRASE) (UNSATURATED ACYL-CoA HYDRATASE) (CROTONASE) |
| Rv1196 | PPE18 | PPE FAMILY PROTEIN |
| Rv1219c | Rv1219c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1243c | PE_PGRS23 | PE-PGRS FAMILY PROTEIN |
| Rv1341 | Rv1341 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1351 | Rv1351 | HYPOTHETICAL PROTEIN |
| Rv1358 | Rv1358 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1365c | rsfA | ANTI-ANTI-SIGMA FACTOR RSFA (ANTI-SIGMA FACTOR ANTAGONIST) (REGULATOR OF SIGMA F A) |
| Rv1415 | ribA2 | PROBABLE RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA2 : GTP cyclohydrolase II + 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) |
| Rv1439c | Rv1439c | HYPOTHETICAL PROTEIN |
| Rv1441c | PE_PGRS26 | PE-PGRS FAMILY PROTEIN |
| Rv1443c | Rv1443c | HYPOTHETICAL PROTEIN |
| Rv1450c | PE_PGRS27 | PE-PGRS FAMILY PROTEIN |
| Rv1460 | Rv1460 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1518 | Rv1518 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1520 | Rv1520 | probable sugar transferase |
| Rv1523 | Rv1523 | Probable methyltransferase |
| Rv1545 | Rv1545 | HYPOTHETICAL PROTEIN |
| Rv1555 | frdD | PROBABLE FUMARATE REDUCTASE [MEMBRANE ANCHOR SUBUNIT] FRDD (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) |
| Rv1560 | Rv1560 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1575 | Rv1575 | Probable phiRV1 phage protein |
| Rv1610 | Rv1610 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv1646 | PE17 | PE FAMILY PROTEIN |
| Rv1651c | PE_PGRS30 | PE-PGRS FAMILY PROTEIN |
| Rv1662 | pks8 | Probable polyketide synthase pks8 |
| Rv1673c | Rv1673c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1693 | Rv1693 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1700 | Rv1700 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1702c | Rv1702c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1706c | PPE23 | PPE FAMILY PROTEIN |
| Rv1720c | Rv1720c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1721c | Rv1721c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1758 | cut1 | PROBABLE CUTINASE CUT1 |
| Rv1761c | Rv1761c | HYPOTHETICAL EXPORTED PROTEIN |
| Rv1766 | Rv1766 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1767 | Rv1767 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1773c | Rv1773c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1788 | PE18 | PE FAMILY PROTEIN |
| Rv1804c | Rv1804c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1818c | PE_PGRS33 | PE-PGRS FAMILY PROTEIN |
| Rv1831 | Rv1831 | HYPOTHETICAL PROTEIN |
| Rv1838c | Rv1838c | CONSERVED HYPOTHETICAL |
| Rv1839c | Rv1839c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1896c | Rv1896c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1899c | lppD | POSSIBLE LIPOPROTEIN LPPD |
| Rv1937 | Rv1937 | POSSIBLE OXYGENASE |
| Rv1954c | Rv1954c | HYPOTHETICAL PROTEIN |
| Rv1957 | Rv1957 | HYPOTHETICAL PROTEIN |
| Rv1961 | Rv1961 | HYPOTHETICAL PROTEIN |
| Rv1964 | yrbE3A | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE3A |
| Rv1969 | mce3D | MCE-FAMILY PROTEIN MCE3D |
| Rv2000 | Rv2000 | HYPOTHETICAL PROTEIN |
| Rv2011c | Rv2011c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2013 | Rv2013 | POSSIBLE TRANSPOSASE |
| Rv2038c | Rv2038c | Probable sugar-transport ATP-binding protein ABC transporter |
| Rv2085 | Rv2085 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2087 | Rv2087 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2096c | Rv2096c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2117 | Rv2117 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2122c | hisE | Probable phosphoribosyl-AMP pyrophosphatase HisE |
| Rv2128 | Rv2128 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2142c | Rv2142c | HYPOTHETICAL PROTEIN |
| Rv2160c | Rv2160c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2161c | Rv2161c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2197c | Rv2197c | Probable conserved transmembrane protein |
| Rv2209 | Rv2209 | Probable conserved integral membrane protein |
| Rv2227 | Rv2227 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2232 | Rv2232 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2245 | kasA | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 1 KASA (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2273 | Rv2273 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2310 | Rv2310 | POSSIBLE EXCISIONASE |
| Rv2312 | Rv2312 | HYPOTHETICAL PROTEIN |
| Rv2342 | Rv2342 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2349c | plcC | PROBABLE PHOSPHOLIPASE C 3 PLCC |
| Rv2377c | mbtH | PUTATIVE CONSERVED PROTEIN MBTH |
| Rv2401 | Rv2401 | HYPOTHETICAL PROTEIN |
| Rv2418c | Rv2418c | HYPOTHETICAL PROTEIN |
| Rv2422 | Rv2422 | HYPOTHETICAL PROTEIN |
| Rv2423 | Rv2423 | HYPOTHETICAL PROTEIN |
| Rv2431c | PE25 | PE FAMILY PROTEIN |
| Rv2433c | Rv2433c | HYPOTHETICAL PROTEIN |
| Rv2446c | Rv2446c | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv2451 | Rv2451 | HYPOTHETICAL PROLINE AND SERINE RICH PROTEIN |
| Rv2490c | PE_PGRS43 | PE-PGRS FAMILY PROTEIN |
| Rv2491 | Rv2491 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2506 | Rv2506 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv2534c | efp | PROBABLE ELONGATION FACTOR P EFP |
| Rv2598 | Rv2598 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2656c | Rv2656c | POSSIBLE phiRv2 PROPHAGE PROTEIN |
| Rv2657c | Rv2657c | PROBABLE phiRv2 PROPHAGE PROTEIN |
| Rv2722 | Rv2722 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2745c | Rv2745c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2750 | Rv2750 | PROBABLE DEHYDROGENASE |
| Rv2755c | hsdS.1 | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM SPECIFICITY DETERMINANT (FRAGMENT) HSDS.1 (S PROTEIN) |
| Rv2756c | hsdM | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM (M PROTEIN) (DNA METHYLTRANSFERASE) |
| Rv2760c | Rv2760c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2872 | Rv2872 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2879c | Rv2879c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2898c | Rv2898c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2929 | Rv2929 | HYPOTHETICAL PROTEIN |
| Rv2956 | Rv2956 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3013 | Rv3013 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3069 | Rv3069 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3071 | Rv3071 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3111 | moaC1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C MOAC1 |
| Rv3175 | Rv3175 | POSSIBLE AMIDASE (AMINOHYDROLASE) |
| Rv3183 | Rv3183 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv3282 | Rv3282 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3289c | Rv3289c | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv3305c | amiA1 | POSSIBLE N-ACYL-L-AMINO ACID AMIDOHYDROLASE AMIA1 (N-ACYL-L-AMINO ACID AMINOHYDROLASE) |
| Rv3323c | moaX | PROBABLE MOAD-MOAE FUSION PROTEIN MOAX |
| Rv3345c | PE_PGRS50 | PE-PGRS FAMILY PROTEIN |
| Rv3354 | Rv3354 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3357 | Rv3357 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3364c | Rv3364c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3365c | Rv3365c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3384c | Rv3384c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3385c | Rv3385c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3424c | Rv3424c | HYPOTHETICAL PROTEIN |
| Rv3513c | fadD18 | PROBABLE FATTY-ACID-CoA LIGASE FADD18 (FRAGMENT) (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3532 | PPE61 | PPE FAMILY PROTEIN |
| Rv3541c | Rv3541c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3548c | Rv3548c | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE |
| Rv3549c | Rv3549c | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE |
| Rv3560c | fadE30 | PROBABLE ACYL-CoA DEHYDROGENASE FADE30 |
| Rv3599c | Rv3599c | HYPOTHETICAL SHORT PROTEIN |
| Rv3630 | Rv3630 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3632 | Rv3632 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv3639c | Rv3639c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3642c | Rv3642c | HYPOTHETICAL PROTEIN |
| Rv3653 | PE_PGRS61 | PE-PGRS FAMILY-RELATED PROTEIN |
| Rv3656c | Rv3656c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3674c | nth | PROBABLE ENDONUCLEASE III NTH (DNA-(APURINIC OR APYRIMIDINIC SITE)LYASE) (AP LYASE) (AP ENDONUCLEASE CLASS I) (ENDODEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) (DEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) |
| Rv3684 | Rv3684 | PROBABLE LYASE |
| Rv3725 | Rv3725 | POSSIBLE OXIDOREDUCTASE |
| Rv3733c | Rv3733c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3741c | Rv3741c | POSSIBLE OXIDOREDUCTASE |
| Rv3748 | Rv3748 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3751 | Rv3751 | PROBABLE INTEGRASE (FRAGMENT) |
| Rv3757c | proW | POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER PROW |
| Rv3766 | Rv3766 | HYPOTHETICAL PROTEIN |
| Rv3769 | Rv3769 | HYPOTHETICAL PROTEIN |
| Rv3776 | Rv3776 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3812 | PE_PGRS62 | PE-PGRS FAMILY PROTEIN |
| Rv3815c | Rv3815c | POSSIBLE ACYLTRANSFERASE |
| Rv3816c | Rv3816c | POSSIBLE ACYLTRANSFERASE |
| Rv3821 | Rv3821 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3827c | Rv3827c | POSSIBLE TRANSPOSASE |
| Rv3834c | serS | SERYL-TRNA SYNTHETASE SERS (SERINE--TRNA LIGASE) (SERRS) (SERINE TRANSLASE) |
| Rv3861 | Rv3861 | HYPOTHETICAL PROTEIN |
| Rv3865 | Rv3865 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3904c | esxE | PUTATIVE ESAT-6 LIKE PROTEIN ESXE (HYPOTHETICAL ALANINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 12) |
| Rv3922c | Rv3922c | POSSIBLE HEMOLYSIN |