| ORF | name | Annotation |
| Rv0040c | mtc28 | SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) |
| Rv0053 | rpsF | PROBABLE 30S RIBOSOMAL PROTEIN S6 RPSF |
| Rv0140 | Rv0140 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0209 | Rv0209 | HYPOTHETICAL PROTEIN |
| Rv0219 | Rv0219 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0253 | nirD | PROBABLE NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT NIRD |
| Rv0323c | Rv0323c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0355c | PPE8 | PPE FAMILY PROTEIN |
| Rv0453 | PPE11 | PPE FAMILY PROTEIN |
| Rv0517 | Rv0517 | POSSIBLE MEMBRANE ACYLTRANSFERASE |
| Rv0552 | Rv0552 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0601c | Rv0601c | PROBABLE TWO COMPONENT SENSOR KINASE [FIRST PART] |
| Rv0623 | Rv0623 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0677c | mmpS5 | POSSIBLE CONSERVED MEMBRANE PROTEIN MMPS5 |
| Rv0678 | Rv0678 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0679c | Rv0679c | CONSERVED HYPOTHETICAL THREONINE RICH PROTEIN |
| Rv0745 | Rv0745 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0795 | Rv0795 | PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 (FRAGMENT) |
| Rv0796 | Rv0796 | PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 |
| Rv0833 | PE_PGRS13 | PE-PGRS FAMILY PROTEIN |
| Rv0903c | prrA | TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA |
| Rv0918 | Rv0918 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0962c | lprP | POSSIBLE LIPOPROTEIN LPRP |
| Rv0986 | Rv0986 | PROBABLE ADHESION COMPONENT TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER |
| Rv1083 | Rv1083 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1112 | Rv1112 | Probable GTP binding protein |
| Rv1158c | Rv1158c | CONSERVED HYPOTHETICAL ALA-, PRO-RICH PROTEIN |
| Rv1184c | Rv1184c | POSSIBLE EXPORTED PROTEIN |
| Rv1356c | Rv1356c | HYPOTHETICAL PROTEIN |
| Rv1426c | lipO | PROBABLE ESTERASE LIPO |
| Rv1467c | fadE15 | PROBABLE ACYL-CoA DEHYDROGENASE FADE15 |
| Rv1529 | fadD24 | PROBABLE FATTY-ACID-CoA LIGASE FADD24 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv1531 | Rv1531 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1563c | treY | Maltooligosyltrehalose synthase TreY |
| Rv1876 | bfrA | PROBABLE BACTERIOFERRITIN BFRA |
| Rv1987 | Rv1987 | POSSIBLE CHITINASE |
| Rv2026c | Rv2026c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2201 | asnB | Probable asparagine synthetase AsnB |
| Rv2330c | lppP | PROBABLE LIPOPROTEIN LPPP |
| Rv2354 | Rv2354 | PROBABLE TRANSPOSASE |
| Rv2378c | mbtG | LYSINE-N-OXYGENASE MBTG (L-LYSINE 6-MONOOXYGENASE) (LYSINE N6-HYDROXYLASE) |
| Rv2596 | Rv2596 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2736c | recX | REGULATORY PROTEIN RECX |
| Rv2754c | thyX | PROBABLE THYMIDYLATE SYNTHASE THYX (TS) (TSase) |
| Rv2815c | Rv2815c | PROBABLE TRANSPOSASE |
| Rv2826c | Rv2826c | HYPOTHETICAL PROTEIN |
| Rv2848c | cobB | PROBABLE COBYRINIC ACID A,C-DIAMIDE SYNTHASE COBB |
| Rv2974c | Rv2974c | CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN |
| Rv3007c | Rv3007c | POSSIBLE OXIDOREDUCTASE |
| Rv3101c | ftsX | PUTATIVE CELL DIVISION PROTEIN FTSX (SEPTATION COMPONENT-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER) |
| Rv3161c | Rv3161c | POSSIBLE DIOXYGENASE |
| Rv3167c | Rv3167c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv3187 | Rv3187 | PROBABLE TRANSPOSASE |
| Rv3203 | lipV | POSSIBLE LIPASE LIPV |
| Rv3261 | fbiA | PROBABLE F420 BIOSYNTHESIS PROTEIN FBIA |
| Rv3314c | deoA | PROBABLE THYMIDINE PHOSPHORYLASE DEOA (TDRPASE) (PYRIMIDINE PHOSPHORYLASE) |
| Rv3327 | Rv3327 | PROBABLE TRANSPOSASE FUSION PROTEIN |
| Rv3377c | Rv3377c | POSSIBLE CYCLASE |
| Rv3378c | Rv3378c | HYPOTHETICAL PROTEIN |
| Rv3427c | Rv3427c | POSSIBLE TRANSPOSASE |
| Rv3454 | Rv3454 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3685c | cyp137 | PROBABLE CYTOCHROME P450 137 CYP137 |
| Rv3687c | rsfB | ANTI-ANTI-SIGMA FACTOR RSFB (ANTI-SIGMA FACTOR ANTAGONIST) (REGULATOR OF SIGMA F B) |
| Rv3688c | Rv3688c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3690 | Rv3690 | PROBABLE CONSERVED MEMBRANE PROTEIN |
| Rv3771c | Rv3771c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3826 | fadD23 | PROBABLE FATTY-ACID-CoA LIGASE FADD23 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3853 | menG | PROBABLES-ADENOSYLMETHIONINE:2-DEMETHYLMENAQUINONE METHYLTRANSFERASE MENG |
| Rv3854c | ethA | MONOOXYGENASE ETHA |