| ORF | name | Annotation |
| Rv0007 | Rv0007 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0028 | Rv0028 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0031 | Rv0031 | POSSIBLE REMNANT OF A TRANSPOSASE |
| Rv0033 | acpA | PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) |
| Rv0035 | fadD34 | PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv0039c | Rv0039c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0067c | Rv0067c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) |
| Rv0095c | Rv0095c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0130 | Rv0130 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0181c | Rv0181c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0215c | fadE3 | PROBABLE ACYL-CoA DEHYDROGENASE FADE3 |
| Rv0273c | Rv0273c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0320 | Rv0320 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv0357c | purA | PROBABLE ADENYLOSUCCINATE SYNTHETASE PURA (IMP--ASPARTATE LIGASE) (ADSS) (AMPSASE) |
| Rv0508 | Rv0508 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0514 | Rv0514 | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv0526 | Rv0526 | POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) |
| Rv0544c | Rv0544c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0596c | Rv0596c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0630c | recB | PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC ENDONUCLEASE) |
| Rv0657c | Rv0657c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0662c | Rv0662c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0665 | Rv0665 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0698 | Rv0698 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0725c | Rv0725c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0740 | Rv0740 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0799c | Rv0799c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0801 | Rv0801 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0807 | Rv0807 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0828c | Rv0828c | POSSIBLE DEAMINASE |
| Rv0832 | PE_PGRS12 | PE-PGRS FAMILY PROTEIN |
| Rv0850 | Rv0850 | PUTATIVE TRANSPOSASE (FRAGMENT) |
| Rv0855 | far | PROBABLE FATTY-ACID-CoA RACEMASE FAR |
| Rv0879c | Rv0879c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0882 | Rv0882 | PROBABLE TRANSMEMBRANE PROTEIN |
| Rv0893c | Rv0893c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0907 | Rv0907 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0909 | Rv0909 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0921 | Rv0921 | POSSIBLE RESOLVASE |
| Rv0956 | purN | PROBABLE 5'-PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE PURN (GART) (GAR TRANSFORMYLASE) (5'-PHOSPHORIBOSYLGLYCINAMIDE TRANSFORMYLASE) |
| Rv0977 | PE_PGRS16 | PE-PGRS FAMILY PROTEIN |
| Rv1012 | Rv1012 | HYPOTHETICAL PROTEIN |
| Rv1032c | trcS | TWO COMPONENT SENSOR HISTIDINE KINASE TRCS |
| Rv1034c | Rv1034c | PROBABLE TRANSPOSASE (FRAGMENT) |
| Rv1039c | PPE15 | PPE FAMILY PROTEIN |
| Rv1052 | Rv1052 | HYPOTHETICAL PROTEIN |
| Rv1076 | lipU | POSSIBLE LIPASE LIPU |
| Rv1115 | Rv1115 | POSSIBLE EXPORTED PROTEIN |
| Rv1120c | Rv1120c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1135c | PPE16 | PPE FAMILY PROTEIN |
| Rv1136 | Rv1136 | POSSIBLE ENOYL-CoA HYDRATASE |
| Rv1143 | mcr | PROBABLE ALPHA-METHYLACYL-CoA RACEMASE MCR (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase ) |
| Rv1239c | corA | POSSIBLE MAGNESIUM AND COBALT TRANSPORT TRANSMEMBRANE PROTEIN CORA |
| Rv1243c | PE_PGRS23 | PE-PGRS FAMILY PROTEIN |
| Rv1320c | Rv1320c | POSSIBLE ADENYLATE CYCLASE (ATP PYROPHOSPHATE-LYASE) (ADENYLYL CYCLASE) |
| Rv1351 | Rv1351 | HYPOTHETICAL PROTEIN |
| Rv1365c | rsfA | ANTI-ANTI-SIGMA FACTOR RSFA (ANTI-SIGMA FACTOR ANTAGONIST) (REGULATOR OF SIGMA F A) |
| Rv1366 | Rv1366 | HYPOTHETICAL PROTEIN |
| Rv1415 | ribA2 | PROBABLE RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA2 : GTP cyclohydrolase II + 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) |
| Rv1494 | Rv1494 | HYPOTHETICAL PROTEIN |
| Rv1516c | Rv1516c | probable sugar transferase |
| Rv1517 | Rv1517 | CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN |
| Rv1526c | Rv1526c | Probable glycosyltransferase |
| Rv1557 | mmpL6 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL6 |
| Rv1575 | Rv1575 | Probable phiRV1 phage protein |
| Rv1590 | Rv1590 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1651c | PE_PGRS30 | PE-PGRS FAMILY PROTEIN |
| Rv1662 | pks8 | Probable polyketide synthase pks8 |
| Rv1702c | Rv1702c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1706c | PPE23 | PPE FAMILY PROTEIN |
| Rv1758 | cut1 | PROBABLE CUTINASE CUT1 |
| Rv1761c | Rv1761c | HYPOTHETICAL EXPORTED PROTEIN |
| Rv1797 | Rv1797 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1838c | Rv1838c | CONSERVED HYPOTHETICAL |
| Rv1839c | Rv1839c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1896c | Rv1896c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1964 | yrbE3A | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE3A |
| Rv1967 | mce3B | MCE-FAMILY PROTEIN MCE3B |
| Rv1969 | mce3D | MCE-FAMILY PROTEIN MCE3D |
| Rv1973 | Rv1973 | POSSIBLE CONSERVED MCE ASSOCIATED MEMBRANE PROTEIN |
| Rv2002 | fabG3 | POSSIBLE 20-BETA-HYDROXYSTEROID DEHYDROGENASE FABG3 (Cortisone reductase) ((R)-20-hydroxysteroid dehydrogenase) |
| Rv2013 | Rv2013 | POSSIBLE TRANSPOSASE |
| Rv2020c | Rv2020c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2026c | Rv2026c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2038c | Rv2038c | Probable sugar-transport ATP-binding protein ABC transporter |
| Rv2087 | Rv2087 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2117 | Rv2117 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2122c | hisE | Probable phosphoribosyl-AMP pyrophosphatase HisE |
| Rv2128 | Rv2128 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2142c | Rv2142c | HYPOTHETICAL PROTEIN |
| Rv2197c | Rv2197c | Probable conserved transmembrane protein |
| Rv2227 | Rv2227 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2232 | Rv2232 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2273 | Rv2273 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2310 | Rv2310 | POSSIBLE EXCISIONASE |
| Rv2342 | Rv2342 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2349c | plcC | PROBABLE PHOSPHOLIPASE C 3 PLCC |
| Rv2401 | Rv2401 | HYPOTHETICAL PROTEIN |
| Rv2418c | Rv2418c | HYPOTHETICAL PROTEIN |
| Rv2422 | Rv2422 | HYPOTHETICAL PROTEIN |
| Rv2423 | Rv2423 | HYPOTHETICAL PROTEIN |
| Rv2431c | PE25 | PE FAMILY PROTEIN |
| Rv2433c | Rv2433c | HYPOTHETICAL PROTEIN |
| Rv2451 | Rv2451 | HYPOTHETICAL PROLINE AND SERINE RICH PROTEIN |
| Rv2490c | PE_PGRS43 | PE-PGRS FAMILY PROTEIN |
| Rv2506 | Rv2506 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv2534c | efp | PROBABLE ELONGATION FACTOR P EFP |
| Rv2549c | Rv2549c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2598 | Rv2598 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2600 | Rv2600 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv2722 | Rv2722 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2750 | Rv2750 | PROBABLE DEHYDROGENASE |
| Rv2755c | hsdS.1 | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM SPECIFICITY DETERMINANT (FRAGMENT) HSDS.1 (S PROTEIN) |
| Rv2756c | hsdM | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM (M PROTEIN) (DNA METHYLTRANSFERASE) |
| Rv2758c | Rv2758c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2820c | Rv2820c | HYPOTHETICAL PROTEIN |
| Rv2863 | Rv2863 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2872 | Rv2872 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2887 | Rv2887 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2898c | Rv2898c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2956 | Rv2956 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3013 | Rv3013 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3039c | echA17 | PROBABLE ENOYL-CoA HYDRATASE ECHA17 (CROTONASE) (UNSATURED ACYL-CoA HYDRATASE) (ENOYL HYDRASE) |
| Rv3068c | pgmA | PROBABLE PHOSPHOGLUCOMUTASE PGMA (GLUCOSE PHOSPHOMUTASE) (PGM) |
| Rv3069 | Rv3069 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3070 | Rv3070 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3071 | Rv3071 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3111 | moaC1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C MOAC1 |
| Rv3179 | Rv3179 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3183 | Rv3183 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv3219 | whiB1 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB1 |
| Rv3231c | Rv3231c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3243c | Rv3243c | HYPOTHETICAL PROTEIN |
| Rv3278c | Rv3278c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3354 | Rv3354 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3357 | Rv3357 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3364c | Rv3364c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3365c | Rv3365c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3384c | Rv3384c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3387 | Rv3387 | POSSIBLE TRANSPOSASE |
| Rv3424c | Rv3424c | HYPOTHETICAL PROTEIN |
| Rv3448 | Rv3448 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3513c | fadD18 | PROBABLE FATTY-ACID-CoA LIGASE FADD18 (FRAGMENT) (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3532 | PPE61 | PPE FAMILY PROTEIN |
| Rv3537 | Rv3537 | PROBABLE DEHYDROGENASE |
| Rv3538 | Rv3538 | PROBABLE DEHYDROGENASE |
| Rv3541c | Rv3541c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3543c | fadE29 | PROBABLE ACYL-CoA DEHYDROGENASE FADE29 |
| Rv3546 | fadA5 | PROBABLE ACETYL-CoA ACETYLTRANSFERASE FADA5 (ACETOACETYL-CoA THIOLASE) |
| Rv3549c | Rv3549c | PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE |
| Rv3632 | Rv3632 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv3653 | PE_PGRS61 | PE-PGRS FAMILY-RELATED PROTEIN |
| Rv3656c | Rv3656c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3674c | nth | PROBABLE ENDONUCLEASE III NTH (DNA-(APURINIC OR APYRIMIDINIC SITE)LYASE) (AP LYASE) (AP ENDONUCLEASE CLASS I) (ENDODEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) (DEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) |
| Rv3684 | Rv3684 | PROBABLE LYASE |
| Rv3741c | Rv3741c | POSSIBLE OXIDOREDUCTASE |
| Rv3751 | Rv3751 | PROBABLE INTEGRASE (FRAGMENT) |
| Rv3757c | proW | POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER PROW |
| Rv3766 | Rv3766 | HYPOTHETICAL PROTEIN |
| Rv3769 | Rv3769 | HYPOTHETICAL PROTEIN |
| Rv3776 | Rv3776 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3812 | PE_PGRS62 | PE-PGRS FAMILY PROTEIN |
| Rv3815c | Rv3815c | POSSIBLE ACYLTRANSFERASE |
| Rv3821 | Rv3821 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3827c | Rv3827c | POSSIBLE TRANSPOSASE |
| Rv3834c | serS | SERYL-TRNA SYNTHETASE SERS (SERINE--TRNA LIGASE) (SERRS) (SERINE TRANSLASE) |
| Rv3850 | Rv3850 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3856c | Rv3856c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3865 | Rv3865 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3886c | mycP2 | PROBABLE ALANINE AND PROLINE RICH MEMBRANE-ANCHORED MYCOSIN MYCP2 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-2) |
| Rv3904c | esxE | PUTATIVE ESAT-6 LIKE PROTEIN ESXE (HYPOTHETICAL ALANINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 12) |
| Rv3905c | esxF | PUTATIVE ESAT-6 LIKE PROTEIN ESXF (HYPOTHETICAL ALANINE AND GLYCINE RICH PROTEIN) (ESAT-6 LIKE PROTEIN 13) |