| ORF | name | Annotation |
| Rv0040c | mtc28 | SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) |
| Rv0119 | fadD7 | PROBABLE FATTY-ACID-CoA LIGASE FADD7 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv0129c | fbpC | SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) |
| Rv0156 | pntAb | PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAB [SECOND PART; INTEGRAL MEMBRANE PROTEIN] (PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA) (NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA) |
| Rv0253 | nirD | PROBABLE NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT NIRD |
| Rv0745 | Rv0745 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0903c | prrA | TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA |
| Rv0923c | Rv0923c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0992c | Rv0992c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1271c | Rv1271c | CONSERVED HYPOTHETICAL SECRETED PROTEIN |
| Rv1529 | fadD24 | PROBABLE FATTY-ACID-CoA LIGASE FADD24 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv1738 | Rv1738 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1910c | Rv1910c | PROBABLE EXPORTED PROTEIN |
| Rv1916 | aceAb | PROBABLE ISOCITRATE LYASE aceAb [SECOND PART] (ISOCITRASE) (ISOCITRATASE) (ICL) |
| Rv1987 | Rv1987 | POSSIBLE CHITINASE |
| Rv1993c | Rv1993c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2017 | Rv2017 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2244 | acpM | MEROMYCOLATE EXTENSION ACYL CARRIER PROTEIN ACPM |
| Rv2245 | kasA | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 1 KASA (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2340c | PE_PGRS39 | PE-PGRS FAMILY PROTEIN |
| Rv2354 | Rv2354 | PROBABLE TRANSPOSASE |
| Rv2488c | Rv2488c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY) |
| Rv2493 | Rv2493 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2604c | Rv2604c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2625c | Rv2625c | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN |
| Rv2815c | Rv2815c | PROBABLE TRANSPOSASE |
| Rv2846c | efpA | POSSIBLE INTEGRAL MEMBRANE EFFLUX PROTEIN EFPA |
| Rv2875 | mpt70 | MAJOR SECRETED IMMUNOGENIC PROTEIN MPT70 |
| Rv2974c | Rv2974c | CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN |
| Rv3112 | moaD1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D MOAD1 (MOLYBDOPTERIN CONVERTING FACTOR SMALL SUBUNIT) (MOLYBDOPTERIN [MPT] CONVERTING FACTOR, SUBUNIT 1) |
| Rv3194c | Rv3194c | POSSIBLE CONSERVED SECRETED PROTEIN |
| Rv3256c | Rv3256c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3300c | Rv3300c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3363c | Rv3363c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3445c | esxU | ESAT-6 LIKE PROTEIN ESXU |
| Rv3503c | fdxD | PROBABLE FERREDOXIN FDXD |
| Rv3508 | PE_PGRS54 | PE-PGRS FAMILY PROTEIN |
| Rv3564 | fadE33 | PROBABLE ACYL-CoA DEHYDROGENASE FADE33 |
| Rv3771c | Rv3771c | CONSERVED HYPOTHETICAL PROTEIN |