| ORF | name | Annotation |
| Rv0007 | Rv0007 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0031 | Rv0031 | POSSIBLE REMNANT OF A TRANSPOSASE |
| Rv0033 | acpA | PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) |
| Rv0055 | rpsR1 | PROBABLE 30S RIBOSOMAL PROTEIN S18-1 RPSR1 |
| Rv0095c | Rv0095c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0181c | Rv0181c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0273c | Rv0273c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0320 | Rv0320 | POSSIBLE CONSERVED EXPORTED PROTEIN |
| Rv0363c | fba | PROBABLE FRUCTOSE-BISPHOSPHATE ALDOLASE FBA |
| Rv0451c | mmpS4 | PROBABLE CONSERVED MEMBRANE PROTEIN MMPS4 |
| Rv0471c | Rv0471c | HYPOTHETICAL PROTEIN |
| Rv0474 | Rv0474 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0507 | mmpL2 | PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL2 |
| Rv0514 | Rv0514 | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv0526 | Rv0526 | POSSIBLE THIOREDOXIN PROTEIN (THIOL-DISULFIDE INTERCHANGE PROTEIN) |
| Rv0531 | Rv0531 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0630c | recB | PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC ENDONUCLEASE) |
| Rv0645c | mmaA1 | METHOXY MYCOLIC ACID SYNTHASE 1 MMAA1 (METHYL MYCOLIC ACID SYNTHASE 1) (MMA1) (HYDROXY MYCOLIC ACID SYNTHASE) |
| Rv0657c | Rv0657c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0686 | Rv0686 | PROBABLE MEMBRANE PROTEIN |
| Rv0698 | Rv0698 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0730 | Rv0730 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0740 | Rv0740 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0782 | ptrBb | PROBABLE PROTEASE II PTRBB [SECOND PART] (OLIGOPEPTIDASE B) |
| Rv0786c | Rv0786c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0807 | Rv0807 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0832 | PE_PGRS12 | PE-PGRS FAMILY PROTEIN |
| Rv0850 | Rv0850 | PUTATIVE TRANSPOSASE (FRAGMENT) |
| Rv0879c | Rv0879c | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0882 | Rv0882 | PROBABLE TRANSMEMBRANE PROTEIN |
| Rv0909 | Rv0909 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0956 | purN | PROBABLE 5'-PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE PURN (GART) (GAR TRANSFORMYLASE) (5'-PHOSPHORIBOSYLGLYCINAMIDE TRANSFORMYLASE) |
| Rv0977 | PE_PGRS16 | PE-PGRS FAMILY PROTEIN |
| Rv1052 | Rv1052 | HYPOTHETICAL PROTEIN |
| Rv1076 | lipU | POSSIBLE LIPASE LIPU |
| Rv1169c | PE11 | PE FAMILY PROTEIN |
| Rv1243c | PE_PGRS23 | PE-PGRS FAMILY PROTEIN |
| Rv1246c | Rv1246c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1351 | Rv1351 | HYPOTHETICAL PROTEIN |
| Rv1354c | Rv1354c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1366 | Rv1366 | HYPOTHETICAL PROTEIN |
| Rv1394c | cyp132 | PROBABLE CYTOCHROME P450 132 CYP132 |
| Rv1415 | ribA2 | PROBABLE RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA2 : GTP cyclohydrolase II + 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) |
| Rv1427c | fadD12 | POSSIBLE LONG-CHAIN-FATTY-ACID--CoA LIGASE FADD12 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-COA SYNTHASE) |
| Rv1515c | Rv1515c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1518 | Rv1518 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1520 | Rv1520 | probable sugar transferase |
| Rv1526c | Rv1526c | Probable glycosyltransferase |
| Rv1555 | frdD | PROBABLE FUMARATE REDUCTASE [MEMBRANE ANCHOR SUBUNIT] FRDD (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) |
| Rv1560 | Rv1560 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1575 | Rv1575 | Probable phiRV1 phage protein |
| Rv1590 | Rv1590 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1603 | hisA | PROBABLE PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE HISA |
| Rv1610 | Rv1610 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv1651c | PE_PGRS30 | PE-PGRS FAMILY PROTEIN |
| Rv1662 | pks8 | Probable polyketide synthase pks8 |
| Rv1706c | PPE23 | PPE FAMILY PROTEIN |
| Rv1758 | cut1 | PROBABLE CUTINASE CUT1 |
| Rv1767 | Rv1767 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1824 | Rv1824 | CONSERVED HYPOTHETICAL MEMBRANE PROTEIN |
| Rv1838c | Rv1838c | CONSERVED HYPOTHETICAL |
| Rv1893 | Rv1893 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1896c | Rv1896c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1964 | yrbE3A | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE3A |
| Rv1969 | mce3D | MCE-FAMILY PROTEIN MCE3D |
| Rv2011c | Rv2011c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2049c | Rv2049c | HYPOTHETICAL PROTEIN |
| Rv2070c | cobK | Probable precorrin-6X reductase CobK |
| Rv2085 | Rv2085 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2087 | Rv2087 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2117 | Rv2117 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2122c | hisE | Probable phosphoribosyl-AMP pyrophosphatase HisE |
| Rv2128 | Rv2128 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2142c | Rv2142c | HYPOTHETICAL PROTEIN |
| Rv2227 | Rv2227 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2232 | Rv2232 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2278 | Rv2278 | PROBABLE TRANSPOSASE |
| Rv2310 | Rv2310 | POSSIBLE EXCISIONASE |
| Rv2312 | Rv2312 | HYPOTHETICAL PROTEIN |
| Rv2342 | Rv2342 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2349c | plcC | PROBABLE PHOSPHOLIPASE C 3 PLCC |
| Rv2356c | PPE40 | PPE FAMILY PROTEIN |
| Rv2401 | Rv2401 | HYPOTHETICAL PROTEIN |
| Rv2418c | Rv2418c | HYPOTHETICAL PROTEIN |
| Rv2422 | Rv2422 | HYPOTHETICAL PROTEIN |
| Rv2423 | Rv2423 | HYPOTHETICAL PROTEIN |
| Rv2431c | PE25 | PE FAMILY PROTEIN |
| Rv2433c | Rv2433c | HYPOTHETICAL PROTEIN |
| Rv2451 | Rv2451 | HYPOTHETICAL PROLINE AND SERINE RICH PROTEIN |
| Rv2452c | Rv2452c | HYPOTHETICAL PROTEIN |
| Rv2506 | Rv2506 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv2598 | Rv2598 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2600 | Rv2600 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv2656c | Rv2656c | POSSIBLE phiRv2 PROPHAGE PROTEIN |
| Rv2722 | Rv2722 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2755c | hsdS.1 | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM SPECIFICITY DETERMINANT (FRAGMENT) HSDS.1 (S PROTEIN) |
| Rv2756c | hsdM | POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM (M PROTEIN) (DNA METHYLTRANSFERASE) |
| Rv2820c | Rv2820c | HYPOTHETICAL PROTEIN |
| Rv2863 | Rv2863 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2872 | Rv2872 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2898c | Rv2898c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2929 | Rv2929 | HYPOTHETICAL PROTEIN |
| Rv2956 | Rv2956 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3013 | Rv3013 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3021c | PPE47 | PPE FAMILY PROTEIN |
| Rv3064c | Rv3064c | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3068c | pgmA | PROBABLE PHOSPHOGLUCOMUTASE PGMA (GLUCOSE PHOSPHOMUTASE) (PGM) |
| Rv3069 | Rv3069 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3070 | Rv3070 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3111 | moaC1 | PROBABLE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C MOAC1 |
| Rv3114 | Rv3114 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3125c | PPE49 | PPE FAMILY PROTEIN |
| Rv3183 | Rv3183 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv3251c | rubA | PROBABLE RUBREDOXIN RUBA |
| Rv3278c | Rv3278c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3354 | Rv3354 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3364c | Rv3364c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3387 | Rv3387 | POSSIBLE TRANSPOSASE |
| Rv3424c | Rv3424c | HYPOTHETICAL PROTEIN |
| Rv3448 | Rv3448 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3489 | Rv3489 | HYPOTHETICAL PROTEIN |
| Rv3513c | fadD18 | PROBABLE FATTY-ACID-CoA LIGASE FADD18 (FRAGMENT) (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3522 | ltp4 | POSSIBLE LIPID TRANSFER PROTEIN OR KETO ACYL-COA THIOLASE LTP4 |
| Rv3541c | Rv3541c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3560c | fadE30 | PROBABLE ACYL-CoA DEHYDROGENASE FADE30 |
| Rv3599c | Rv3599c | HYPOTHETICAL SHORT PROTEIN |
| Rv3632 | Rv3632 | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv3639c | Rv3639c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3642c | Rv3642c | HYPOTHETICAL PROTEIN |
| Rv3656c | Rv3656c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3684 | Rv3684 | PROBABLE LYASE |
| Rv3712 | Rv3712 | POSSIBLE LIGASE |
| Rv3733c | Rv3733c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3738c | PPE66 | PPE FAMILY PROTEIN |
| Rv3741c | Rv3741c | POSSIBLE OXIDOREDUCTASE |
| Rv3757c | proW | POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER PROW |
| Rv3766 | Rv3766 | HYPOTHETICAL PROTEIN |
| Rv3789 | Rv3789 | POSSIBLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3796 | Rv3796 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3812 | PE_PGRS62 | PE-PGRS FAMILY PROTEIN |
| Rv3821 | Rv3821 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3834c | serS | SERYL-TRNA SYNTHETASE SERS (SERINE--TRNA LIGASE) (SERRS) (SERINE TRANSLASE) |
| Rv3850 | Rv3850 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3861 | Rv3861 | HYPOTHETICAL PROTEIN |
| Rv3865 | Rv3865 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3922c | Rv3922c | POSSIBLE HEMOLYSIN |