| ORF | name | Annotation |
| Rv0116c | Rv0116c | POSSIBLE CONSERVED MEMBRANE PROTEIN |
| Rv0195 | Rv0195 | POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0752c | fadE9 | PROBABLE ACYL-CoA DEHYDROGENASE FADE9 |
| Rv0826 | Rv0826 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0846c | Rv0846c | PROBABLE OXIDASE |
| Rv0847 | lpqS | PROBABLE LIPOPROTEIN LPQS |
| Rv0849 | Rv0849 | PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN |
| Rv0968 | Rv0968 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0969 | ctpV | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE CTPV |
| Rv0990c | Rv0990c | HYPOTHETICAL PROTEIN |
| Rv1152 | Rv1152 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv1471 | trxB1 | PROBABLE THIOREDOXIN TRXB1 |
| Rv1528c | papA4 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4 |
| Rv1805c | Rv1805c | HYPOTHETICAL PROTEIN |
| Rv1922 | Rv1922 | PROBABLE CONSERVED LIPOPROTEIN |
| Rv1954c | Rv1954c | HYPOTHETICAL PROTEIN |
| Rv1997 | ctpF | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF |
| Rv2012 | Rv2012 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2016 | Rv2016 | HYPOTHETICAL PROTEIN |
| Rv2017 | Rv2017 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2466c | Rv2466c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2515c | Rv2515c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2658c | Rv2658c | POSSIBLE PROPHAGE PROTEIN |
| Rv2661c | Rv2661c | HYPOTHETICAL PROTEIN |
| Rv2698 | Rv2698 | PROBABLE CONSERVED ALANINE RICH TRANSMEMBRANE PROTEIN |
| Rv2699c | Rv2699c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2706c | Rv2706c | HYPOTHETICAL PROTEIN |
| Rv2745c | Rv2745c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2963 | Rv2963 | PROBABLE INTEGRAL MEMBRANE PROTEIN |
| Rv3054c | Rv3054c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3081 | Rv3081 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3289c | Rv3289c | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv3291c | Rv3291c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) |
| Rv3334 | Rv3334 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MERR-FAMILY) |
| Rv3340 | metC | PROBABLE O-ACETYLHOMOSERINE SULFHYDRYLASE METC (HOMOCYSTEINE SYNTHASE) (O-ACETYLHOMOSERINE (THIOL)-LYASE) (OAH SULFHYDRYLASE) (O-ACETYL-L-HOMOSERINE SULFHYDRYLASE) |
| Rv3574 | Rv3574 | TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) |
| Rv3833 | Rv3833 | TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARAC-FAMILY) |
| Rv3848 | Rv3848 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |