| ORF | name | Annotation |
| Rv0079 | Rv0079 | HYPOTHETICAL PROTEIN |
| Rv0080 | Rv0080 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0081 | Rv0081 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0106 | Rv0106 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0188 | Rv0188 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv0195 | Rv0195 | POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) |
| Rv0232 | Rv0232 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0275c | Rv0275c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) |
| Rv0280 | PPE3 | PPE FAMILY PROTEIN |
| Rv0569 | Rv0569 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0570 | nrdZ | PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) |
| Rv0571c | Rv0571c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0572c | Rv0572c | HYPOTHETICAL PROTEIN |
| Rv0574c | Rv0574c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0575c | Rv0575c | POSSIBLE OXIDOREDUCTASE |
| Rv0677c | mmpS5 | POSSIBLE CONSERVED MEMBRANE PROTEIN MMPS5 |
| Rv0678 | Rv0678 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0752c | fadE9 | PROBABLE ACYL-CoA DEHYDROGENASE FADE9 |
| Rv0753c | mmsA | PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE MMSA (METHYLMALONIC ACID SEMIALDEHYDE DEHYDROGENASE) (MMSDH) |
| Rv0792c | Rv0792c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) |
| Rv0824c | desA1 | PROBABLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA1 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE) (PROTEIN DES) |
| Rv0823c | Rv0823c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0826 | Rv0826 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0834c | PE_PGRS14 | PE-PGRS FAMILY PROTEIN |
| Rv0846c | Rv0846c | PROBABLE OXIDASE |
| Rv0847 | lpqS | PROBABLE LIPOPROTEIN LPQS |
| Rv0848 | cysK2 | POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) |
| Rv0886 | fprB | PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) |
| Rv1169c | PE11 | PE FAMILY PROTEIN |
| Rv1285 | cysD | PROBABLE SULFATE ADENYLYLTRANSFERASE SUBUNIT 2 CYSD |
| Rv1403c | Rv1403c | PUTATIVE METHYLTRANSFERASE |
| Rv1405c | Rv1405c | PUTATIVE METHYLTRANSFERASE |
| Rv1535 | Rv1535 | HYPOTHETICAL PROTEIN |
| Rv1733c | Rv1733c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv1734c | Rv1734c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1736c | narX | PROBABLE NITRATE REDUCTASE NARX |
| Rv1737c | narK2 | POSSIBLE NITRATE/NITRITE TRANSPORTER NARK2 |
| Rv1738 | Rv1738 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1806 | PE20 | PE FAMILY PROTEIN |
| Rv1807 | PPE31 | PPE FAMILY PROTEIN |
| Rv1812c | Rv1812c | PROBABLE DEHYDROGENASE |
| Rv1813c | Rv1813c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1874 | Rv1874 | HYPOTHETICAL PROTEIN |
| Rv1894c | Rv1894c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1955 | Rv1955 | HYPOTHETICAL PROTEIN |
| Rv1996 | Rv1996 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1997 | ctpF | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF |
| Rv2003c | Rv2003c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2004c | Rv2004c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2005c | Rv2005c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2006 | otsB1 | PROBABLE TREHALOSE-6-PHOSPHATE PHOSPHATASE OTSB1 (TREHALOSE-PHOSPHATASE) (TPP) |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2011c | Rv2011c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2016 | Rv2016 | HYPOTHETICAL PROTEIN |
| Rv2028c | Rv2028c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2029c | pfkB | Probable phosphofructokinase PfkB (PHOSPHOHEXOKINASE) |
| Rv2030c | Rv2030c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2031c | hspX | HEAT SHOCK PROTEIN HSPX (ALPHA-CRSTALLIN HOMOLOG) (14 kDa ANTIGEN) (HSP16.3) |
| Rv2032 | acg | Conserved hypothetical protein Acg |
| Rv2055c | rpsR2 | Probable ribosomal protein S18 RpsR2 |
| Rv2056c | rpsN2 | Probable ribosomal protein S14 RpsN2 |
| Rv2057c | rpmG1 | Probable ribosomal protein L33 |
| Rv2058c | rpmB2 | Probable 50S ribosomal protein L28 RpmB2 |
| Rv2332 | mez | PROBABLE [NAD] DEPENDENT MALATE OXIDOREDUCTASE MEZ (MALIC ENZYME) (NAD-MALIC ENZYME) (MALATE DEHYDROGENASE (OXALOACETATE DECARBOXYLATING)) (PYRUVIC-MALIC CARBOXYLASE) (NAD-ME) |
| Rv2358 | Rv2358 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ARSR-FAMILY) |
| Rv2428 | ahpC | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) |
| Rv2429 | ahpD | ALKYL HYDROPEROXIDE REDUCTASE D PROTEIN AHPD (ALKYL HYDROPEROXIDASE D) |
| Rv2516c | Rv2516c | HYPOTHETICAL PROTEIN |
| Rv2517c | Rv2517c | HYPOTHETICAL PROTEIN |
| Rv2557 | Rv2557 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2623 | TB31.7 | CONSERVED HYPOTHETICAL PROTEIN TB31.7 |
| Rv2624c | Rv2624c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2625c | Rv2625c | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN |
| Rv2626c | Rv2626c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2627c | Rv2627c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2628 | Rv2628 | HYPOTHETICAL PROTEIN |
| Rv2629 | Rv2629 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2630 | Rv2630 | HYPOTHETICAL PROTEIN |
| Rv2631 | Rv2631 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2660c | Rv2660c | HYPOTHETICAL PROTEIN |
| Rv2662 | Rv2662 | HYPOTHETICAL PROTEIN |
| Rv2694c | Rv2694c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2745c | Rv2745c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2780 | ald | SECRETED L-ALANINE DEHYDROGENASE ALD (40 KDA ANTIGEN) (TB43) |
| Rv2913c | Rv2913c | POSSIBLE D-AMINO ACID AMINOHYDROLASE (D-AMINO ACID HYDROLASE) |
| Rv2953 | Rv2953 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2990c | Rv2990c | HYPOTHETICAL PROTEIN |
| Rv3021c | PPE47 | PPE FAMILY PROTEIN |
| Rv3022c | PPE48 | PPE FAMILY PROTEIN |
| Rv3049c | Rv3049c | PROBABLE MONOOXYGENASE |
| Rv3127 | Rv3127 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3130c | Rv3130c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3131 | Rv3131 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3132c | devS | TWO COMPONENT SENSOR HISTIDINE KINASE DEVS |
| Rv3133c | devR/dosR | TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY LUXR/UHPA-FAMILY) |
| Rv3134c | Rv3134c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3229c | Rv3229c | POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE) |
| Rv3252c | alkB | PROBABLE TRANSMEMBRANE ALKANE 1-MONOOXYGENASE ALKB (ALKANE 1-HYDROXYLASE) (LAURIC ACID OMEGA-HYDROXYLASE) (OMEGA-HYDROXYLASE) (FATTY ACID OMEGA-HYDROXYLASE) (ALKANE HYDROXYLASE-RUBREDOXIN) |
| Rv3269 | Rv3269 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3270 | ctpC | PROBABLE METAL CATION-TRANSPORTING P-TYPE ATPASE C CTPC |
| Rv3289c | Rv3289c | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv3290c | lat | PROBABLE L-LYSINE-EPSILON AMINOTRANSFERASE LAT (L-LYSINE AMINOTRANSFERASE) (LYSINE 6-AMINOTRANSFERASE) |
| Rv3337 | Rv3337 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3340 | metC | PROBABLE O-ACETYLHOMOSERINE SULFHYDRYLASE METC (HOMOCYSTEINE SYNTHASE) (O-ACETYLHOMOSERINE (THIOL)-LYASE) (OAH SULFHYDRYLASE) (O-ACETYL-L-HOMOSERINE SULFHYDRYLASE) |
| Rv3515c | fadD19 | PROBABLE FATTY-ACID-CoA LIGASE FADD19 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3746c | PE34 | PROBABLE PE FAMILY PROTEIN (PE FAMILY-RELATED PROTEIN) |
| Rv3832c | Rv3832c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3841 | bfrB | POSSIBLE BACTERIOFERRITIN BFRB |
| Rv3862c | whiB6 | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB6 |