| ORF | name | Annotation |
| Rv0009 | ppiA | PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) |
| Rv0028 | Rv0028 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0079 | Rv0079 | HYPOTHETICAL PROTEIN |
| Rv0080 | Rv0080 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0096 | PPE1 | PPE FAMILY PROTEIN |
| Rv0372c | Rv0372c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0399c | lpqK | POSSIBLE CONSERVED LIPOPROTEIN LPQK |
| Rv0569 | Rv0569 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0573c | Rv0573c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0575c | Rv0575c | POSSIBLE OXIDOREDUCTASE |
| Rv0742 | PE_PGRS8 | PE-PGRS FAMILY PROTEIN |
| Rv0745 | Rv0745 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0767c | Rv0767c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0974c | accD2 | PROBABLE ACETYL-/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD2 |
| Rv1128c | Rv1128c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1130 | Rv1130 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1518 | Rv1518 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1519 | Rv1519 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1574 | Rv1574 | Probable phiRV1 phage related protein |
| Rv1669 | Rv1669 | HYPOTHETICAL PROTEIN |
| Rv1717 | Rv1717 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1733c | Rv1733c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv1734c | Rv1734c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1736c | narX | PROBABLE NITRATE REDUCTASE NARX |
| Rv1737c | narK2 | POSSIBLE NITRATE/NITRITE TRANSPORTER NARK2 |
| Rv1738 | Rv1738 | CONSERVED HYPOTHETICAL PROTEIN |