| ORF | name | Annotation |
| Rv0108c | Rv0108c | HYPOTHETICAL PROTEIN |
| Rv0249c | Rv0249c | PROBABLE SUCCINATE DEHYDROGENASE [MEMBRANE ANCHOR SUBUNIT] (SUCCINIC DEHYDROGENASE) |
| Rv0250c | Rv0250c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0268c | Rv0268c | HYPOTHETICAL PROTEIN |
| Rv0291 | mycP3 | PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) |
| Rv0350 | dnaK | PROBABLE CHAPERONE PROTEIN DNAK (HEAT SHOCK PROTEIN 70) (HEAT SHOCK 70 KDA PROTEIN) (HSP70) |
| Rv0351 | grpE | PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) |
| Rv0352 | dnaJ1 | PROBABLE CHAPERONE PROTEIN DNAJ1 |
| Rv0455c | Rv0455c | CONSERVED HYPOTHETICAL PROTEIN |
| RV0469 | umaA | POSSIBLE MYCOLIC ACID SYNTHASE UMAA |
| Rv0516c | Rv0516c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0569 | Rv0569 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0635 | Rv0635 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0643c | mmaA3 | METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) |
| Rv0655 | mkl | POSSIBLE RIBONUCLEOTIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER MKL |
| Rv0701 | rplC | PROBABLE 50S RIBOSOMAL PROTEIN L3 RPLC |
| Rv0714 | rplN | PROBABLE 50S RIBOSOMAL PROTEIN L14 RPLN |
| Rv0715 | rplX | PROBABLE 50S RIBOSOMAL PROTEIN L24 RPLX |
| Rv0909 | Rv0909 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1078 | pra | Probable Proline-rich antigen homolog pra |
| Rv1172c | PE12 | PE FAMILY PROTEIN |
| Rv1174c | TB8.4 | LOW MOLECULAR WEIGHT T-CELL ANTIGEN TB8.4 |
| Rv1298 | rpmE | PROBABLE 50S RIBOSOMAL PROTEIN L31 RPME |
| Rv1738 | Rv1738 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1872c | lldD2 | POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD2 |
| Rv2005c | Rv2005c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2069 | sigC | PROBABLE RNA POLYMERASE SIGMA FACTOR, ECF SUBFAMILY, SIGC |
| Rv2094c | tatA | PROBABLE SEC-INDEPENDENT PROTEIN TRANSLOCASE MEMBRANE-BOUND PROTEIN TATA |
| Rv0009 | ppiA | PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) |
| Rv0250c | Rv0250c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0350 | dnaK | PROBABLE CHAPERONE PROTEIN DNAK (HEAT SHOCK PROTEIN 70) (HEAT SHOCK 70 KDA PROTEIN) (HSP70) |
| Rv0351 | grpE | PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) |
| Rv0352 | dnaJ1 | PROBABLE CHAPERONE PROTEIN DNAJ1 |
| Rv0440 | groEL2 | 60 KDA CHAPERONIN 2 GROEL2 (PROTEIN CPN60-2) (GROEL PROTEIN 2) (65 KDA ANTIGEN) (HEAT SHOCK PROTEIN 65) (CELL WALL PROTEIN A) (ANTIGEN A) |
| Rv0455c | Rv0455c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0464c | Rv0464c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0469 | umaA | POSSIBLE MYCOLIC ACID SYNTHASE UMAA |
| Rv0705 | rpsS | PROBABLE 30S RIBOSOMAL PROTEIN S19 RPSS |
| Rv0709 | rpmC | PROBABLE 50S RIBOSOMAL PROTEIN L29 RPMC |
| Rv0979c | Rv0979c | HYPOTHETICAL PROTEIN |
| Rv0991c | Rv0991c | CONSERVED HYPOTHETICAL SERINE RICH PROTEIN |
| Rv1182 | papA3 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA3 |
| Rv1185c | fadD21 | PROBABLE FATTY-ACID--CoA LIGASE FADD21 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv1233c | Rv1233c | CONSERVED HYPOTHETICAL MEMBRANE PROTEIN |
| Rv1388 | mihF | PUTATIVE INTEGRATION HOST FACTOR MIHF |
| Rv1476 | Rv1476 | POSSIBLE MEMBRANE PROTEIN |
| Rv1642 | rpmI | Probable 50S ribosomal protein L35 RpmI |
| Rv1721c | Rv1721c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1791 | PE19 | PE FAMILY PROTEIN |
| Rv1860 | apa | ALANINE AND PROLINE RICH SECRETED PROTEIN APA (FIBRONECTIN ATTACHMENT PROTEIN) (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa glycoprotein) (45/47 kDa antigen) |
| Rv1980c | mpt64 | IMMUNOGENIC PROTEIN MPT64 (ANTIGEN MPT64/MPB64) |
| Rv2069 | sigC | PROBABLE RNA POLYMERASE SIGMA FACTOR, ECF SUBFAMILY, SIGC |
| Rv2081c | Rv2081c | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv2094c | tatA | PROBABLE SEC-INDEPENDENT PROTEIN TRANSLOCASE MEMBRANE-BOUND PROTEIN TATA |
| Rv2185c | TB16.3 | CONSERVED HYPOTHETICAL PROTEIN TB16.3 |
| Rv2271 | Rv2271 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2302 | Rv2302 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2882c | frr | RIBOSOME RECYCLING FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF) |
| Rv2928 | tesA | PROBABLE THIOESTERASE TESA |
| Rv2931 | ppsA | PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSA |
| Rv2941 | fadD28 | FATTY-ACID-CoA LIGASE FADD28 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv2949c | Rv2949c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3224 | Rv3224 | POSSIBLE IRON-REGULATED SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Rv3281 | Rv3281 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3390 | lpqD | PROBABLE CONSERVED LIPOPROTEIN LPQD |
| RV3417c | groEL1 | 60 KDA CHAPERONIN 1 GROEL1 (PROTEIN CPN60-1) (GROEL PROTEIN 1) |
| Rv3418c | groES | 10 KDA CHAPERONIN GROES (PROTEIN CPN10) (PROTEIN GROES) (BCG-A HEAT SHOCK PROTEIN) (10 KDA ANTIGEN) |
| Rv3528c | Rv3528c | HYPOTHETICAL PROTEIN |
| Rv3615c | Rv3615c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3654c | Rv3654c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3750c | Rv3750c | POSSIBLE EXCISIONASE |
| Rv3786c | Rv3786c | HYPOTHETICAL PROTEIN |
| Rv3846 | sodA | SUPEROXIDE DISMUTASE [FE] SODA |
| Rv3852 | hns | POSSIBLE HISTONE-LIKE PROTEIN HNS |
| Rv3874 | esxB | 10 KDA CULTURE FILTRATE ANTIGEN ESXB (LHP) (CFP10) |
| Rv3891c | esxD | POSSIBLE ESAT-6 LIKE PROTEIN ESXD |
| Rv3136 | PPE51 | PPE FAMILY PROTEIN |