| ORF | name | Annotation |
| Rv0108c | Rv0108c | HYPOTHETICAL PROTEIN |
| Rv0249c | Rv0249c | PROBABLE SUCCINATE DEHYDROGENASE [MEMBRANE ANCHOR SUBUNIT] (SUCCINIC DEHYDROGENASE) |
| Rv0250c | Rv0250c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0251c | hsp | HEAT SHOCK PROTEIN HSP (HEAT-STRESS-INDUCED RIBOSOME-BINDING PROTEIN A) |
| Rv0268c | Rv0268c | HYPOTHETICAL PROTEIN |
| Rv0291 | mycP3 | PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) |
| Rv0350 | dnaK | PROBABLE CHAPERONE PROTEIN DNAK (HEAT SHOCK PROTEIN 70) (HEAT SHOCK 70 KDA PROTEIN) (HSP70) |
| Rv0351 | grpE | PROBABLE GRPE PROTEIN (HSP-70 COFACTOR) |
| Rv0352 | dnaJ1 | PROBABLE CHAPERONE PROTEIN DNAJ1 |
| Rv0455c | Rv0455c | CONSERVED HYPOTHETICAL PROTEIN |
| RV0469 | umaA | POSSIBLE MYCOLIC ACID SYNTHASE UMAA |
| Rv0516c | Rv0516c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0569 | Rv0569 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0635 | Rv0635 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0643c | mmaA3 | METHOXY MYCOLIC ACID SYNTHASE 3 MMAA3 (METHYL MYCOLIC ACID SYNTHASE 3) (MMA3) (HYDROXY MYCOLIC ACID SYNTHASE) |
| Rv0655 | mkl | POSSIBLE RIBONUCLEOTIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER MKL |
| Rv0701 | rplC | PROBABLE 50S RIBOSOMAL PROTEIN L3 RPLC |
| Rv0714 | rplN | PROBABLE 50S RIBOSOMAL PROTEIN L14 RPLN |
| Rv0715 | rplX | PROBABLE 50S RIBOSOMAL PROTEIN L24 RPLX |
| Rv0909 | Rv0909 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1078 | pra | Probable Proline-rich antigen homolog pra |
| Rv1172c | PE12 | PE FAMILY PROTEIN |
| Rv1174c | TB8.4 | LOW MOLECULAR WEIGHT T-CELL ANTIGEN TB8.4 |
| Rv1298 | rpmE | PROBABLE 50S RIBOSOMAL PROTEIN L31 RPME |
| Rv1738 | Rv1738 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1872c | lldD2 | POSSIBLE L-LACTATE DEHYDROGENASE (CYTOCHROME) LLDD2 |
| Rv2005c | Rv2005c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2069 | sigC | PROBABLE RNA POLYMERASE SIGMA FACTOR, ECF SUBFAMILY, SIGC |
| Rv2094c | tatA | PROBABLE SEC-INDEPENDENT PROTEIN TRANSLOCASE MEMBRANE-BOUND PROTEIN TATA |
| Rv2137c | Rv2137c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2185c | TB16.3 | CONSERVED HYPOTHETICAL PROTEIN TB16.3 |
| Rv2193 | ctaE | PROBABLE CYTOCHROME C OXIDASE (SUBUNIT III) CTAE |
| Rv2288 | Rv2288 | HYPOTHETICAL PROTEIN |
| Rv2289 | cdh | Probable CDP-diacylglycerol pyrophosphatase Cdh (CDP-diacylglycerol diphosphatase) (CDP-diacylglycerol phosphatidylhydrolase) |
| Rv2764c | thyA | PROBABLE THYMIDYLATE SYNTHASE THYA (TS) (TSASE) |
| Rv2816c | Rv2816c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2876 | Rv2876 | POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2960c | Rv2960c | HYPOTHETICAL PROTEIN |
| Rv3101c | ftsX | PUTATIVE CELL DIVISION PROTEIN FTSX (SEPTATION COMPONENT-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER) |
| Rv3128c | Rv3128c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3407 | Rv3407 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3418c | groES | 10 KDA CHAPERONIN GROES (PROTEIN CPN10) (PROTEIN GROES) (BCG-A HEAT SHOCK PROTEIN) (10 KDA ANTIGEN) |
| Rv3508 | PE_PGRS54 | PE-PGRS FAMILY PROTEIN |
| Rv3654c | Rv3654c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3679 | Rv3679 | PROBABLE ANION TRANSPORTER ATPASE |
| Rv3680 | Rv3680 | PROBABLE ANION TRANSPORTER ATPASE |
| Rv3841 | bfrB | POSSIBLE BACTERIOFERRITIN BFRB |