| ORF | name | Annotation |
| Rv0040c | mtc28 | SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) |
| Rv0068 | Rv0068 | PROBABLE OXIDOREDUCTASE |
| Rv0142 | Rv0142 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0176 | Rv0176 | PROBABLE CONSERVED MCE ASSOCIATED TRANSMEMBRANE PROTEIN |
| Rv0255c | cobQ1 | PROBABLE COBYRIC ACID SYNTHASE COBQ1 |
| Rv0371c | Rv0371c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0387c | Rv0387c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0396 | Rv0396 | HYPOTHETICAL PROTEIN |
| Rv0429c | def | PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) |
| Rv0437c | psd | POSSIBLE PHOSPHATIDYLSERINE DECARBOXYLASE PSD (PS DECARBOXYLASE) |
| Rv0442c | PPE10 | PPE FAMILY PROTEIN |
| Rv0620 | galK | PROBABLE GALACTOKINASE GALK (GALACTOSE KINASE) |
| Rv0623 | Rv0623 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0652 | rplL | PROBABLE 50S RIBOSOMAL PROTEIN L7/L12 RPLL (SA1) |
| Rv0724 | sppA | POSSIBLE PROTEASE IV SPPA (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE) |
| Rv0745 | Rv0745 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0753c | mmsA | PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE MMSA (METHYLMALONIC ACID SEMIALDEHYDE DEHYDROGENASE) (MMSDH) |
| Rv0796 | Rv0796 | PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110 |
| Rv0924c | mntH | DIVALENT CATION-TRANSPORT INTEGRAL MEMBRANE PROTEIN MNTH (BRAMP) (MRAMP) |
| Rv0995 | rimJ | POSSIBLE RIBOSOMAL-PROTEIN-ALANINE ACETYLTRANSFERASE RIMJ (ACETYLATING ENZYME FOR N-TERMINAL OF RIBOSOMAL PROTEIN S5) |
| Rv1203c | Rv1203c | HYPOTHETICAL PROTEIN |
| Rv1214c | PE14 | PE FAMILY PROTEIN |
| Rv1467c | fadE15 | PROBABLE ACYL-CoA DEHYDROGENASE FADE15 |
| Rv1570 | bioD | Probable dethiobiotin synthetase bioD |
| Rv1683 | Rv1683 | Possible long-chain acyl-CoA synthase |
| Rv1756c | Rv1756c | PUTATIVE TRANSPOSASE |
| Rv1805c | Rv1805c | HYPOTHETICAL PROTEIN |
| Rv1807 | PPE31 | PPE FAMILY PROTEIN |
| Rv1910c | Rv1910c | PROBABLE EXPORTED PROTEIN |
| Rv2201 | asnB | Probable asparagine synthetase AsnB |
| Rv2210c | ilvE | PROBABLE BRANCHED-CHAIN AMINO ACID TRANSAMINASE ILVE |
| Rv2245 | kasA | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 1 KASA (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2493 | Rv2493 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2562 | Rv2562 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2567 | Rv2567 | CONSERVED HYPOTHETICAL ALANINE AND LEUCINE RICH PROTEIN |
| Rv2618 | Rv2618 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2680 | Rv2680 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2736c | recX | REGULATORY PROTEIN RECX |
| Rv2826c | Rv2826c | HYPOTHETICAL PROTEIN |
| Rv3015c | Rv3015c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3151 | nuoG | PROBABLE NADH DEHYDROGENASE I (CHAIN G) NUOG (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN G) |
| Rv3161c | Rv3161c | POSSIBLE DIOXYGENASE |
| Rv3314c | deoA | PROBABLE THYMIDINE PHOSPHORYLASE DEOA (TDRPASE) (PYRIMIDINE PHOSPHORYLASE) |
| Rv3444c | esxT | PUTATIVE ESAT-6 LIKE PROTEIN ESXT |
| Rv3533c | PPE62 | PPE FAMILY PROTEIN |
| Rv3647c | Rv3647c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3659c | Rv3659c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3689 | Rv3689 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3701c | Rv3701c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3771c | Rv3771c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3853 | menG | PROBABLES-ADENOSYLMETHIONINE:2-DEMETHYLMENAQUINONE METHYLTRANSFERASE MENG |