| ORF | name | Annotation |
| Rv0057 | Rv0057 | HYPOTHETICAL PROTEIN |
| Rv0173 | lprK | POSSIBLE MCE-FAMILY LIPOPROTEIN LPRK (MCE-FAMILY LIPOPROTEIN MCE1E) |
| Rv0890c | Rv0890c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) |
| Rv0891c | Rv0891c | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0892 | Rv0892 | PROBABLE MONOOXYGENASE |
| Rv0950c | Rv0950c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1195 | PE13 | PE FAMILY PROTEIN |
| Rv1631 | coaE | Probable dephospho-CoA kinase coaE (dephosphocoenzyme A kinase) |
| Rv1700 | Rv1700 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2141c | Rv2141c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2172c | Rv2172c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2666 | Rv2666 | PROBABLE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1081 (FRAGMENT) |
| Rv2881c | cdsA | PROBABLE INTEGRAL MEMBRANE PHOSPHATIDATE CYTIDYLYLTRANSFERASE CDSA (CDP-DIGLYCERIDE SYNTHETASE) (CDP-DIGLYCERIDE PYROPHOSPHORYLASE) (CDP-DIACYLGLYCEROL SYNTHASE) (CDS) (CTP:PHOSPHATIDATE CYTIDYLYLTRANSFERASE) (CDP-DAG SYNTHASE) (CDP-DG SYNTHETASE) |
| Rv3115 | Rv3115 | PROBABLE TRANSPOSASE |
| Rv3156 | nuoL | PROBABLE NADH DEHYDROGENASE I (CHAIN L) NUOL (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN L) |
| Rv3364c | Rv3364c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3798 | Rv3798 | PROBABLE TRANSPOSASE |