| ORF | name | Annotation |
| Rv0140 | Rv0140 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0572c | Rv0572c | HYPOTHETICAL PROTEIN |
| Rv0574c | Rv0574c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1221 | sigE | ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE |
| Rv1736c | narX | PROBABLE NITRATE REDUCTASE NARX |
| Rv1737c | narK2 | POSSIBLE NITRATE/NITRITE TRANSPORTER NARK2 |
| Rv1739c | Rv1739c | PROBABLE SULPHATE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER |
| Rv1996 | Rv1996 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1997 | ctpF | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF |
| Rv2003c | Rv2003c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2004c | Rv2004c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2005c | Rv2005c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2028c | Rv2028c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2030c | Rv2030c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2031c | hspX | HEAT SHOCK PROTEIN HSPX (ALPHA-CRSTALLIN HOMOLOG) (14 kDa ANTIGEN) (HSP16.3) |
| Rv2032 | acg | Conserved hypothetical protein Acg |
| Rv2616 | Rv2616 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2617c | Rv2617c | PROBABLE TRANSMEMBRANE PROTEIN |
| Rv2618 | Rv2618 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2619c | Rv2619c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2620c | Rv2620c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv2622 | Rv2622 | POSSIBLE METHYLTRANSFERASE (METHYLASE) |
| Rv2623 | TB31.7 | CONSERVED HYPOTHETICAL PROTEIN TB31.7 |
| Rv2624c | Rv2624c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2625c | Rv2625c | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN |
| Rv2627c | Rv2627c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2628 | Rv2628 | HYPOTHETICAL PROTEIN |
| Rv2629 | Rv2629 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3127 | Rv3127 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3128c | Rv3128c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3129 | Rv3129 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3130c | Rv3130c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3131 | Rv3131 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3132c | devS | TWO COMPONENT SENSOR HISTIDINE KINASE DEVS |
| Rv3133c | devR/dosR | TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY LUXR/UHPA-FAMILY) |