| ORF | name | Annotation |
| Rv0040c | mtc28 | SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) |
| Rv0179c | lprO | POSSIBLE LIPOPROTEIN LPRO |
| Rv0207c | Rv0207c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0312 | Rv0312 | CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN |
| Rv0342 | iniA | ISONIAZID INDUCTIBLE GENE PROTEIN INIA |
| Rv0359 | Rv0359 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv0569 | Rv0569 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0951 | sucC | PROBABLE SUCCINYL-CoA SYNTHETASE (BETA CHAIN) SUCC (SCS-BETA) |
| Rv1592c | Rv1592c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1736c | narX | PROBABLE NITRATE REDUCTASE NARX |
| Rv1987 | Rv1987 | POSSIBLE CHITINASE |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2193 | ctaE | PROBABLE CYTOCHROME C OXIDASE (SUBUNIT III) CTAE |
| Rv2243 | fabD | MALONYL CoA-ACYL CARRIER PROTEIN TRANSACYLASE FABD (Malonyl CoA:AcpM acyltransferase) (MCT) |
| Rv2244 | acpM | MEROMYCOLATE EXTENSION ACYL CARRIER PROTEIN ACPM |
| Rv2245 | kasA | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 1 KASA (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2246 | kasB | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 2 KASB (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2428 | ahpC | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) |
| Rv2721c | Rv2721c | POSSIBLE CONSERVED TRANSMEMBRANE ALANINE AND GLYCINE RICH PROTEIN |
| Rv2846c | efpA | POSSIBLE INTEGRAL MEMBRANE EFFLUX PROTEIN EFPA |
| Rv3134c | Rv3134c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3354 | Rv3354 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3456c | rplQ | PROBABLE 50S RIBOSOMAL PROTEIN L17 RPLQ |
| Rv3524 | Rv3524 | PROBABLE CONSERVED MEMBRANE PROTEIN |