| ORF | name | Annotation |
| Rv0212c | nadR | POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN NADR (PROBABLY ASNC-FAMILY) |
| Rv0244c | fadE5 | PROBABLE ACYL-CoA DEHYDROGENASE FADE5 |
| Rv0467 | icl | ISOCITRATE LYASE ICL (ISOCITRASE) (ISOCITRATASE) |
| Rv0468 | fadB2 | PROBABLE 3-HYDROXYBUTYRYL-CoA DEHYDROGENASE FADB2 (BETA-HYDROXYBUTYRYL-CoA DEHYDROGENASE) (BHBD) |
| Rv0792c | Rv0792c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) |
| Rv0824c | desA1 | PROBABLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA1 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE) (PROTEIN DES) |
| Rv1129c | Rv1129c | PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN |
| Rv1131 | gltA1 | PROBABLE CITRATE SYNTHASE I GLTA1 |
| Rv1169c | PE11 | PE FAMILY PROTEIN |
| Rv1462 | Rv1462 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1738 | Rv1738 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2031c | hspX | HEAT SHOCK PROTEIN HSPX (ALPHA-CRSTALLIN HOMOLOG) (14 kDa ANTIGEN) (HSP16.3) |
| Rv2032 | acg | Conserved hypothetical protein Acg |
| Rv2123 | PPE37 | PPE FAMILY PROTEIN |
| Rv2383c | mbtB | PHENYLOXAZOLINE SYNTHASE MBTB (PHENYLOXAZOLINE SYNTHETASE) |
| Rv2626c | Rv2626c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2873 | mpt83 | CELL SURFACE LIPOPROTEIN MPT83 (LIPOPROTEIN P23) |
| Rv3515c | fadD19 | PROBABLE FATTY-ACID-CoA LIGASE FADD19 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3516 | echA19 | POSSIBLE ENOYL-CoA HYDRATASE ECHA19 (ENOYL HYDRASE) (UNSATURATED ACYL-CoA HYDRATASE) (CROTONASE) |
| Rv3556c | fadA6 | PROBABLE ACETYL-CoA ACETYLTRANSFERASE FADA6 (ACETOACETYL-CoA THIOLASE) |