| ORF | name | Annotation |
| Rv0079 | Rv0079 | HYPOTHETICAL PROTEIN |
| Rv0080 | Rv0080 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0081 | Rv0081 | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv0569 | Rv0569 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv0572c | Rv0572c | HYPOTHETICAL PROTEIN |
| Rv0574c | Rv0574c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1264 | Rv1264 | ADENYLYL CYCLASE (ATP PYROPHOSPHATE-LYASE) (ADENYLATE CYCLASE) |
| Rv1592c | Rv1592c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1733c | Rv1733c | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv1734c | Rv1734c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1736c | narX | PROBABLE NITRATE REDUCTASE NARX |
| Rv1737c | narK2 | POSSIBLE NITRATE/NITRITE TRANSPORTER NARK2 |
| Rv1738 | Rv1738 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1739c | Rv1739c | PROBABLE SULPHATE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER |
| Rv1813c | Rv1813c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1997 | ctpF | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF |
| Rv1998c | Rv1998c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2003c | Rv2003c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2005c | Rv2005c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2007c | fdxA | PROBABLE FERREDOXIN FDXA |
| Rv2028c | Rv2028c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2029c | pfkB | Probable phosphofructokinase PfkB (PHOSPHOHEXOKINASE) |
| Rv2030c | Rv2030c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2031c | hspX | HEAT SHOCK PROTEIN HSPX (ALPHA-CRSTALLIN HOMOLOG) (14 kDa ANTIGEN) (HSP16.3) |
| Rv2032 | acg | Conserved hypothetical protein Acg |
| Rv2428 | ahpC | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) |
| Rv2623 | TB31.7 | CONSERVED HYPOTHETICAL PROTEIN TB31.7 |
| Rv2624c | Rv2624c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2625c | Rv2625c | PROBABLE CONSERVED TRANSMEMBRANE ALANINE AND LEUCINE RICH PROTEIN |
| Rv2626c | Rv2626c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2627c | Rv2627c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2628 | Rv2628 | HYPOTHETICAL PROTEIN |
| Rv2629 | Rv2629 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2630 | Rv2630 | HYPOTHETICAL PROTEIN |
| Rv2659c | Rv2659c | PROBABLE phiRv2 PROPHAGE INTEGRASE |
| Rv3126c | Rv3126c | HYPOTHETICAL PROTEIN |
| Rv3127 | Rv3127 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3128c | Rv3128c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3129 | Rv3129 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3130c | Rv3130c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3131 | Rv3131 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3132c | devS | TWO COMPONENT SENSOR HISTIDINE KINASE DEVS |
| Rv3133c | devR/dosR | TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY LUXR/UHPA-FAMILY) |
| Rv3134c | Rv3134c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3841 | bfrB | POSSIBLE BACTERIOFERRITIN BFRB |
| Rv3842c | glpQ1 | PROBABLE GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE GLPQ1 (GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE) |
| Rv3908 | Rv3908 | CONSERVED HYPOTHETICAL PROTEIN |