| ORF | name | Annotation |
| Rv0050 | ponA1 | PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) |
| Rv0170 | mce1B | MCE-FAMILY PROTEIN MCE1B |
| Rv0467 | icl | ISOCITRATE LYASE ICL (ISOCITRASE) (ISOCITRATASE) |
| Rv0903c | prrA | TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA |
| Rv0969 | ctpV | PROBABLE METAL CATION TRANSPORTER P-TYPE ATPASE CTPV |
| Rv1221 | sigE | ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE |
| Rv1638 | uvrA | PROBABLE EXCINUCLEASE ABC (SUBUNIT A - DNA-BINDING ATPase) UVRA |
| Rv3070 | Rv3070 | PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN |
| Rv3223c | sigH | ALTERNATIVE RNA POLYMERASE SIGMA-E FACTOR (SIGMA-24) SIGH (RPOE) |
| Rv3483c | Rv3483c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3825c | pks2 | PROBABLE POLYKETIDE SYNTHASE PKS2 |