| ORF | name | Annotation |
| Rv0129c | fbpC | SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) |
| Rv0341 | iniB | ISONIAZID INDUCTIBLE GENE PROTEIN INIB |
| Rv0342 | iniA | ISONIAZID INDUCTIBLE GENE PROTEIN INIA |
| Rv1592c | Rv1592c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv1772 | Rv1772 | HYPOTHETICAL PROTEIN |
| Rv2243 | fabD | MALONYL CoA-ACYL CARRIER PROTEIN TRANSACYLASE FABD (Malonyl CoA:AcpM acyltransferase) (MCT) |
| Rv2244 | acpM | MEROMYCOLATE EXTENSION ACYL CARRIER PROTEIN ACPM |
| Rv2245 | kasA | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 1 KASA (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2246 | kasB | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 2 KASB (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2247 | accD6 | ACETYL/PROPIONYL-CoA CARBOXYLASE (BETA SUBUNIT) ACCD6 |
| Rv2428 | ahpC | ALKYL HYDROPEROXIDE REDUCTASE C PROTEIN AHPC (ALKYL HYDROPEROXIDASE C) |
| Rv2846c | efpA | POSSIBLE INTEGRAL MEMBRANE EFFLUX PROTEIN EFPA |
| Rv3139 | fadE24 | PROBABLE ACYL-CoA DEHYDROGENASE FADE24 |
| Rv3140 | fadE23 | PROBABLE ACYL-CoA DEHYDROGENASE FADE23 |