| ORF | name | Annotation |
| Rv0016c | pbpA | PROBABLE PENICILLIN-BINDING PROTEIN PBPA |
| Rv0129c | fbpC | SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) |
| Rv0169 | mce1A | MCE-FAMILY PROTEIN MCE1A |
| Rv0170 | mce1B | MCE-FAMILY PROTEIN MCE1B |
| Rv0171 | mce1C | MCE-FAMILY PROTEIN MCE1C |
| Rv0172 | mce1D | MCE-FAMILY PROTEIN MCE1D |
| Rv0173 | lprK | POSSIBLE MCE-FAMILY LIPOPROTEIN LPRK (MCE-FAMILY LIPOPROTEIN MCE1E) |
| Rv0174 | mce1F | MCE-FAMILY PROTEIN MCE1F |
| Rv0288 | esxH | LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 7 ESXH (10 kDa ANTIGEN) (CFP-7) (PROTEIN TB10.4) |
| Rv0291 | mycP3 | PROBABLE MEMBRANE-ANCHORED MYCOSIN MYCP3 (SERINE PROTEASE) (SUBTILISIN-LIKE PROTEASE) (SUBTILASE-LIKE) (MYCOSIN-3) |
| Rv0934 | pstS1 | PERIPLASMIC PHOSPHATE-BINDING LIPOPROTEIN PSTS1 (PBP-1) (PSTS1) |
| Rv1162 | narH | PROBABLE RESPIRATORY NITRATE REDUCTASE (BETA CHAIN) NARH |
| Rv1164 | narI | PROBABLE RESPIRATORY NITRATE REDUCTASE (GAMMA CHAIN) NARI |
| Rv1181 | pks4 | PROBABLE POLYKETIDE BETA-KETOACYL SYNTHASE PKS4 |
| Rv1182 | papA3 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA3 |
| Rv1368 | lprF | PROBABLE CONSERVED LIPOPROTEIN LPRF |
| Rv1477 | Rv1477 | HYPOTHETICAL INVASION PROTEIN |
| Rv1527c | pks5 | Probable polyketide synthase pks5 |
| Rv1646 | PE17 | PE FAMILY PROTEIN |
| Rv1884c | rpfC | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFC |
| Rv1916 | aceAb | PROBABLE ISOCITRATE LYASE aceAb [SECOND PART] (ISOCITRASE) (ISOCITRATASE) (ICL) |
| Rv1967 | mce3B | MCE-FAMILY PROTEIN MCE3B |
| Rv2031c | hspX | HEAT SHOCK PROTEIN HSPX (ALPHA-CRSTALLIN HOMOLOG) (14 kDa ANTIGEN) (HSP16.3) |
| Rv2151c | ftsQ | POSSIBLE CELL DIVISION PROTEIN FTSQ |
| Rv2152c | murC | Probable UDP-N-acetylmuramate-alanine ligase MurC |
| Rv2153c | murG | ProbableUPD-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase MurG |
| Rv2154c | ftsW | FtsW-like protein FtsW |
| Rv2163c | pbpB | Probable penicillin-binding membrane protein pbpB |
| Rv2244 | acpM | MEROMYCOLATE EXTENSION ACYL CARRIER PROTEIN ACPM |
| Rv2245 | kasA | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 1 KASA (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2246 | kasB | 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 2 KASB (BETA-KETOACYL-ACP SYNTHASE) (KAS I) |
| Rv2253 | Rv2253 | Possible secreted unknown protein |
| Rv2524c | fas | PROBABLE FATTY ACID SYNTHASE FAS (FATTY ACID SYNTHETASE) |
| Rv2583c | relA | PROBABLE GTP PYROPHOSPHOKINASE RELA (ATP:GTP 3'- PYROPHOSPHOTRANSFERASE) (PPGPP SYNTHETASE I) ((P)PPGPP SYNTHETASE) (GTP DIPHOSPHOKINASE) |
| Rv3019c | esxR | SECRETED ESAT-6 LIKE PROTEIN ESXR (TB10.3) (ESAT-6 LIKE PROTEIN 9) |
| Rv3144c | PPE52 | PPE-FAMILY PROTEIN |
| Rv3414c | sigD | PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA-D FACTOR SIGD |
| Rv3494c | mce4F | MCE-FAMILY PROTEIN MCE4F |
| Rv3495c | lprN | POSSIBLE MCE-FAMILY LIPOPROTEIN LPRN (MCE-FAMILY LIPOPROTEIN MCE4E) |
| Rv3496c | mce4D | MCE-FAMILY PROTEIN MCE4D |
| Rv3497c | mce4C | MCE-FAMILY PROTEIN MCE4C |
| Rv3763 | lpqH | 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH |
| Rv3875 | esxA | 6 KDA EARLY SECRETORY ANTIGENIC TARGET ESXA (ESAT-6) |
| Rv0016c | pbpA | PROBABLE PENICILLIN-BINDING PROTEIN PBPA |
| Rv0129c | fbpC | SECRETED ANTIGEN 85-C FBPC (85C) (ANTIGEN 85 COMPLEX C) (AG58C) (MYCOLYL TRANSFERASE 85C) (FIBRONECTIN-BINDING PROTEIN C) |