| ORF | name | Annotation |
| Rv0904c | accD3 | PUTATIVE ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE (SUBUNIT BETA) ACCD3 (ACCASE BETA CHAIN) |
| Rv1184c | Rv1184c | POSSIBLE EXPORTED PROTEIN |
| Rv1185c | fadD21 | PROBABLE FATTY-ACID--CoA LIGASE FADD21 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv1639c | Rv1639c | CONSERVED HYPOTHETICAL MEMBRANE PROTEIN |
| Rv1931c | Rv1931c | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN |
| Rv2276 | cyp121 | CYTOCHROME P450 121 CYP121 |
| Rv2288 | Rv2288 | HYPOTHETICAL PROTEIN |
| Rv2289 | cdh | Probable CDP-diacylglycerol pyrophosphatase Cdh (CDP-diacylglycerol diphosphatase) (CDP-diacylglycerol phosphatidylhydrolase) |
| Rv2329c | narK1 | PROBABLE NITRITE EXTRUSION PROTEIN 1 NARK1 (NITRITE FACILITATOR 1) |
| Rv2375 | Rv2375 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv2376c | cfp2 | LOW MOLECULAR WEIGHT ANTIGEN CFP2 (LOW MOLECULAR WEIGHT PROTEIN ANTIGEN 2) (CFP-2) |
| Rv2391 | nirA | PROBABLE FERREDOXIN-DEPENDENT NITRITE REDUCTASE NIRA |
| Rv2590 | fadD9 | PROBABLE FATTY-ACID-CoA LIGASE FADD9 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) |
| Rv3136 | PPE51 | PPE FAMILY PROTEIN |
| Rv3312A | Rv3312A | SECRETED PROTEIN ANTIGEN |
| Rv3479 | Rv3479 | POSSIBLE TRANSMEMBRANE PROTEIN |
| Rv3486 | Rv3486 | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3487c | lipF | PROBABLE ESTERASE/LIPASE LIPF |
| Rv3686c | Rv3686c | CONSERVED HYPOTHETICAL PROTEIN |
| Rv3689 | Rv3689 | PROBABLE CONSERVED TRANSMEMBRANE PROTEIN |
| Rv3822 | Rv3822 | |
| Rv3824c | papA1 | PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA1 |