CHEM & BIOCHEM 153B and 153BH.

Biochemistry: DNA, RNA and protein synthesis
Instructor: Prof. Juli Feigon

Programs Downloading & Installation

Tutorial #1 ( GAL4 )

Tutorial #2 ( DNA quadruplex )

Tutorial #3 ( Chime scripting )

These chime exhibits were prepared by undergraduate students in the honors class CHEM & BIOCHEM 153B and 158BH as an honors project. Each student was assigned a structure paper relevant to the course material. Their project was to prepare a chime exhibit illustrating and describing the macromolecule.

This Chime exhibit is maintained by Duilio Cascio.


SPRING 2005

1. Purine Riboswitch by Amanda Abramson
2. Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA by Brian Chung
3. Conserved Tertiary Structure of hTR: pseudoknot essential for function by Deema Saad
4. Structural basis for the recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III by Erica Schim
5. HIV-1 Reverse Transcriptase (HIV-1 RT) by Justin Miyamoto
6. Structural basis for recognition of AU-rich element RNA by the HuD protein by Sang Jee
   

WINTER 2003

1. Mechanisms of Nonspecific Base Recognition and Base Excision by Human Alkylbase-DNA Repair Enzyme by Shelley Chang
   
2. Conformation of the Lac repressor bound to Operator by Charleston Chiang
   
3. Structure description of 'discriminating' glutamyl-tRNA synthetase by Jake Hunter
   
4. Winged-helix protein hRFX1 by Christopher Kwan
   
5. Bacteriophage T7 Replication Complexby Jessica Marcellus
   
6. Structure of a TFIIB-TBP-TATA-element and its Assembly by Jolee J. Passanante
   
7. Nucleosome Core Particle at 2.8 Angstrom Resolutionby Philip Rosen
   
8. Structure of the Hairpin Ribozymeby Nate Steele
   
9. DNA Recognition by Antiparallel Beta-Strands of Met Repressor by Shiho Tanaka
   
10. X-Ray Structures of Myc-Max, Mad Max and Max-Max DNA Complexes: Molecular Bases of Regulation by Transcription Factors< by Jacqueline Vekich
    
11. The CAP-alphaCTD-DNA Complexby Aaron Young
    

WINTER 1999

1. DNA recognition by GAL4 by Amie Jimenez
   
2. Lac Operon Repressor complexed with DNA and Inducer by Amy Gimlen
   
3. MAX-DNA complex by Ben Koo
   
4. Structure of the A site of 16S ribosomal RNA by Brian Oshinomi
   
5. CAP-DNA by Delandy Young
   
6. Yeast Phenylalanine T-RNA by Fred Tsen
   
7. Structure of a Group I Ribozyme by Julie Kim
   
8. Klenow Fragment of DNA-Pol I by Sundeep Kang
   
9. The GCN4 Basic Region Leucine Zipper By Thao Tran